Panicum virgatum (switchgrass): 120673939
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Entry
120673939 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase SINA-like 1
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120673939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120673939
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120673939
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120673939
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_ZnF
Sina_RING
Motif
Other DBs
NCBI-GeneID:
120673939
NCBI-ProteinID:
XP_039810920
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Position
5N:10116399..10118208
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AA seq
283 aa
AA seq
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MGDKRPWPRVLRQLPGVKRPRGADETETVTSQHRAEKITVDVDADLLQCCVCAGPLTAPL
FQCTKGHISCSECCTDGAMADECECLMCREPETATRCRAMERVLAGVSVPCPFRQHGCAE
MIPYASKEAHEGSCRYAPCHCPIPDCAGYAGKSLVDHVMVDHPDVHRTRVKPGFLTALRM
RSSEQARLVCLDNYAELLLVAGRDVPGGRSLSIVGLMDGLFEVEDELKYRIEVVGKDGVL
ALSGPTKGVERLDRPYEASAFLFVPDAIWYSHPEDIPVFIHLK
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacaagaggccttggccgcgggtgttaagacagcttcccggcgtgaagaggccc
aggggggcagatgagactgaaaccgtgacgagccaacaccgagcggagaagatcactgtc
gacgtggacgccgacctgctgcagtgctgtgtttgtgctggtccattgaccgcgcccctt
ttccagtgcacgaaaggccacatctcatgttcagagtgctgcacggacggggccatggcc
gacgagtgcgagtgcctgatgtgccgtgagccggagaccgccacccgctgccgcgccatg
gagcgcgtcctcgccggcgtgtccgtgccgtgccctttccggcagcacgggtgcgccgag
atgatcccctacgcgagcaaggaagcccacgaggggtcgtgccgctacgccccttgccac
tgccccatccccgactgtgctggctacgccggcaagtccctggtcgaccacgtcatggtg
gaccaccctgacgtgcaccgcacccgcgtcaagccgggctttctcacggcgctgaggatg
cgctcgtccgagcaggcccgcttggtgtgtctcgacaactacgcggagctcctgctcgtc
gccggcagggacgtgccggggggccgttcgctgtccatcgtggggctcatggacgggctg
tttgaggttgaggatgagctcaagtacaggatcgaggtggttggcaaggacggcgtgctc
gcactgtccggtccgaccaagggcgtcgagcggctggacaggccgtacgaagccagcgct
ttcttgttcgtcccggacgccatctggtactcccatccggaggacatccccgtgttcatc
cacctgaaatga
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