Panicum virgatum (switchgrass): 120673947
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Entry
120673947 CDS
T07260
Name
(RefSeq) rhomboid-like protein 20 isoform X1
KO
K25216
ubiquitin-associated domain-containing protein 2
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120673947
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
LMBR1L-GP78-UBAC2 complex
120673947
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Ortholog
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GFIT
Motif
Pfam:
UBA
UBA_7
Rhomboid
UBA_RAD5A
Motif
Other DBs
NCBI-GeneID:
120673947
NCBI-ProteinID:
XP_039810926
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Position
5N:14774744..14785679
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AA seq
291 aa
AA seq
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MQGGVSGFQNAPVTRAVVLTSGLLSVVFSAQRRALGISYQEIITNFRLWKIFPSVFAFQS
TPELMFGLYLLYYFRVFERQIGSNKYSVFCLFTITVSSLLEILSLVILKDTNYISTLASG
PYGLIFASFVPFFLDIPITSRYRIFGLNFSDKSFIYLAGLQLLLSSWKRSLIPGIFGLVA
GSLYRLNVFGIRKMKIPQVISSFFARYFAPSPGSTPRPSRTVVGNTPSQTGRAVQQNQSS
TGFAPMVEPPESSVAMLVSMGFDGNDARQALMRARNDINVATNILLEAQSR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgcagggcggcgtctccggattccagaacgcgccggtaacgcgggcggtcgtcctcacc
agcggcctcctctccgtcgtcttcagtgcgcagcgccgcgccctcggcatctcataccag
gaaattataacgaatttccgtttatggaagatattcccatctgtatttgctttccagtca
acaccagagttaatgtttggactgtaccttctctattacttccgtgtgtttgagaggcag
attggatctaacaaatactcggttttttgcttgttcactatcacagtgtcatcacttctt
gagatcctatcattggtcatcctgaaagatacaaactacatcagcacacttgcatctgga
ccttatggtcttatatttgcctcatttgttccattctttcttgacattccgatcacatca
cgataccgtatctttggcctaaatttcagcgacaaatcattcatttacctagctggtctt
cagcttcttttatcttcctggaagcgctcccttattcctggtatatttggtctggttgct
ggttctctctatcgtctaaatgtgtttggcatccggaaaatgaagatcccacaggttatc
tcatcattttttgcaagatactttgccccttcaccaggaagtacacctcgtccttccagg
actgtcgttggaaacacaccgtcacaaacaggccgtgctgttcagcagaatcagtcatca
actggatttgcacctatggtggaacctccagagtcctctgttgctatgctggtctcaatg
ggctttgatggcaatgacgctagacaggcactcatgagagctagaaatgacatcaatgtg
gcaacgaacatcctactagaagcacagtctcgttga
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