Panicum virgatum (switchgrass): 120673967
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Entry
120673967 CDS
T07260
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog A-like isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
pvir03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120673967
03460 Fanconi anemia pathway
120673967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120673967
03036 Chromosome and associated proteins [BR:
pvir03036
]
120673967
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120673967
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
120673967
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
120673967
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
120673967
FA (Fanconi anemia) pathway
Downstream FA components
120673967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA2
BRCA-2_OB1
BRCA-2_helical
Motif
Other DBs
NCBI-GeneID:
120673967
NCBI-ProteinID:
XP_039810950
LinkDB
All DBs
Position
5N:6735229..6750256
Genome browser
AA seq
1568 aa
AA seq
DB search
MPIKWQVWTQPDGRLVWVPATETPPTSPPEAPATARPPDPAPPRSPPPDGAPIEENLGAD
GADGGRLPLMASLLLQALDKLTEGNGKDALTEGVNTGGLFSTGSGRLVAVSERAIRRASA
LVGEEMEEATNSNRKRKVTSLSIAEQPFGDDAGLQGEQTNLDVPLGGGAHKDNLLPMFQT
GSGKIVPLSKDSVQKSRAVLEENVENAAGARQPMFHTGTGRSVLVSKSSIDKARAVLEGQ
TVANEGDAGGMEQFPMFQTGSGRAVSISMASVQKAKAVLDENNVYTGNVEGPGYPDQSLI
FEIGSGRPVLISERSIERSRSVLMDEGVQNTGQRDTGDRLPIFQTGTGRPVAVKHGSIKK
AKAVLEDGDVKRSGNGDDICATSFQFETPTSVLMSSSLIMNDRTVTPKENTSVQEKCYEG
DGHLPLFQTGLGRSVTVSKSSIKRASAILEPRNIAKELEDEAHLNDVCATSIIKTGLGKS
VLSENSKENAQVVSEAVKRVNSDIGDGFAETPMFQAGIQQFSPENGSSRHRATLLEKGKL
ATKVYEDCGNSLPMFQTGSGKSVLVSESSVRKARAVLEDEGDVNRENCKLVKMDKKFPVF
TSPLKTSCARTVNVSSAGVSRAATLLGLEEDTLSTQFFGHVGDKLGTKITVKLENPERML
DVTSVHAISGGPHKGFCPTEEPIVIESHQQFGFSKTTSDTGGHSIRFSTASGRSMAISTD
ALQRAKSLLSDSGSEVSPNDSVGCSLASAKEKQPDSTISPKGDESNLLHGTKAIGYAVPD
IPVTKGNANKFHMGRQYLSINEIPKVPKLPRYLSEGDNAIDTKDKTQRHHMPAGPLVDIT
NYMATGSGKNTDHFANGKRVIGGRNSISPFKRPRSSRFITPIKSNKLSSAGESKVASTQI
IPCRTKLSARYPFQHQRKSCKEYFGGPPRFLQIEHVTDDVKLMDAKRAEKFKFQHMGTGA
EDFQKMLLTCGASISYATKEWVSNHYKWIVWKLASLERCYPTRAAGKFLTVDNVFEELKY
RYDREVNHGHRSAIKKILEGNASPSLMMVLCISAIYSCPDQSDNKLEVDKIDNNEDSNGN
KSLSASNRNRNMSAKIELTDGWYSLDASLDMALSEQLQKRKLFLGQKLRIWGASLCGWSG
PVSFHEASGTVKLMVHINGTYRARWNETLGFCKHAGLPLAFKCIKASGGRVPRTLVGITR
IYPVLFRERLPDGRSIVRSERMERKALQLYHQRVSMIAEDIMFEQQENCDSTDDNEEGAE
ICKMLERAAEPEVIMAGMTSEQLMHFSSYKEKQKEIMQNEVAKKVQKVLEVADLSSRDVT
PFLKVRVMGLVSKLSASTSSNKGGLITIWNPTEMQKANLVEGQIYSVTGLMPSNNCTEIL
YLHGRGSSTTWKPLASTQTTDFEPFFTPRKAIELSKFGEVPLSSEFDIAGFILYVGNMYL
CNNQKRQWLFITDGSKFISEQKSEEQDCLLAVIFSSPTTGEDSALFSNTLSGNTVGFSNL
VKRQKNQLRHIWVADATESSTYTLSHEIPRKSHLKEAAASAERWASRSCHKIQELKQRVL
CIVGDSGG
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgccgatcaagtggcaggtctggacccagcccgacggcaggctcgtctgggtccccgcg
accgagacgcctcccacctcgcccccggaggccccggcgacggcgcgtccgcctgaccct
gcccctcctcgttcgccgccgcccgacggcgcgccaatcgaagaaaacctaggcgcggac
ggcgccgacggtggccgcttgcccttaatggccagcctactcctccaagcgctggacaag
ttgactgaaggaaatgggaaggatgcactgactgagggtgtcaacacgggtggattgttc
tccactgggtcggggaggttggtggccgtcagcgagagggccataaggagagccagtgct
ttggtcggtgaggagatggaggaggctactaacagtaacaggaagagaaaggtgacgagt
ttgtcaattgcagagcaaccatttggtgatgatgccggtctacagggtgaacagacaaac
ttagatgttccattgggaggtggtgcacataaagataacttgctccccatgttccaaact
ggatcaggcaaaatagtcccgctcagcaaggactcggttcagaagtcaagagctgtttta
gaagaaaatgttgagaatgctgctggtgccagacaaccaatgttccatactggtacaggt
agatcggtcctagtcagcaagagctccattgataaggcgagagctgttttagagggtcaa
acagtcgcaaatgaaggagatgcaggaggcatggaacagtttccaatgttccaaactggt
tcaggtagagctgtatcaatcagtatggcatctgtacagaaagctaaggctgtgctagat
gaaaataatgtatataccgggaatgttgagggtcctggttaccccgatcagtctctgata
tttgaaattggttctggaagaccagtcttgatcagtgaaagatccattgagagatctagg
tctgtgctgatggatgaaggtgttcaaaatacgggacaacgggatactggcgaccggctc
ccaattttccaaacaggaacgggaaggcctgttgctgtaaagcatggctctattaaaaag
gcaaaggcagttttagaggatggagatgttaaaagaagtggaaatggagacgacatttgt
gctacatctttccaatttgaaaccccgacgtctgttttgatgagtagcagtttgattatg
aacgacagaactgttacaccaaaggaaaatacttcagtgcaagaaaaatgttacgagggt
gacgggcacttgccattgttccagactgggttagggaggtcagttacagtaagtaagagc
tcaattaaaagggcaagtgcaattctggagccaaggaacattgcaaaagaattggaagat
gaagctcatctaaatgatgtttgtgccacctcgataattaaaactggacttggaaagtcc
gtcttaagcgagaactcaaaggagaatgcacaagttgtctcagaggctgtaaaaagagta
aatagtgacattggggatggctttgctgaaaccccaatgttccaggctggaatacaacag
ttttcacctgagaatggaagttcaagacatagggccaccctcttggagaaaggcaaatta
gcaacaaaagtttatgaagactgtggaaattcattgccaatgtttcaaactggctccgga
aaatcggtcttggtcagtgaaagctcagtgcggaaggcaagggctgttttggaggatgaa
ggtgatgtaaaccgagagaactgcaagttggttaaaatggacaaaaagtttccagtcttc
acttcacctctcaagacaagctgtgcaagaactgtaaatgtatcttcagctggtgtttct
cgagctgctaccttattgggcttggaggaggataccctttcaacacaattttttggacat
gtgggcgataagttaggaacgaagataactgttaagctggaaaatccagaacgaatgctt
gatgttacatccgtacatgcaatttctggtggccctcataaaggtttttgtccaacagaa
gaacccatagttatagaaagtcatcagcagttcggattttctaaaactacctctgatact
ggtgggcattctatcaggttcagcactgctagtggccgatcaatggctatttctactgat
gcactacagcgtgcaaaaagccttttgagcgattcaggttcagaggtttcaccaaatgat
tcagtaggctgctctctggcatcagctaaagagaagcaaccagattcaactatttctcca
aaaggagatgaatctaacttattgcacgggactaaagcaattggatatgctgtacctgat
atccctgtaactaaaggaaatgctaataagtttcatatggggaggcaatatctctcaatc
aatgaaattccaaaggtcccgaagcttcccagatatttatccgaaggtgacaacgcaatt
gacaccaaagacaagacccagaggcaccatatgccagctggacctttggttgacatcact
aactacatggctactggttctggaaaaaatactgaccactttgctaatggaaagagagta
atcggaggaagaaactccatatctccattcaaacgaccccgttcttccaggttcatcaca
ccaataaaaagcaacaaactttcttctgctggagaatccaaagtagcatcaactcagatc
atcccctgtaggacaaagctgtctgctcgttatcctttccaacatcaaaggaaaagctgc
aaagaatattttggtggtcctcctcgcttcctacagattgaacatgtaactgatgacgtg
aagctcatggatgcaaaaagagctgagaagtttaaatttcagcatatgggtactggagca
gaagattttcagaagatgctgctcacatgtggtgcttcaatatcatatgcaactaaagaa
tgggtcagtaatcactataaatggattgtgtggaaacttgcttcactggagagatgctac
ccaactagagctgctggtaaattcttgacggttgacaatgtttttgaggagcttaagtac
cggtatgatagggaagtgaaccatggccaccggtcagcaataaaaaagattttagaaggg
aatgcctcaccatctttgatgatggtcctgtgcatttcagctatttactcttgtcctgac
caaagcgacaataagttggaggttgacaagatagataataatgaagacagcaatggcaat
aaaagcttgtcagcctctaatagaaatagaaacatgtctgcaaaaattgaattaactgat
ggatggtattcacttgacgcatcgttagatatggcactttcagaacaactacaaaaaaga
aagcttttcttaggacagaagcttcggatatggggagcttctttatgtggttggtctggg
cctgtgtcatttcatgaggcatctggtactgtcaaattaatggtccacataaatggcacc
tatcgtgcaagatggaatgagactttgggattctgcaagcatgctggactcccactggca
ttcaagtgcataaaagcttccggtggtagagttcctaggacactggttggaatcacaagg
atatatcctgttctcttccgggaaaggttgcctgatggtcgttctattgtgagatctgaa
aggatggaaagaaaggcgctgcaactgtaccaccagagagtatctatgattgcagaagat
attatgtttgaacaacaagaaaactgtgacagtacagatgataacgaggaaggggctgaa
atttgcaaaatgctagagcgtgctgctgaacctgaagttataatggcaggcatgacctca
gagcagttgatgcacttctcatcttataaagaaaaacagaaggagattatgcaaaatgaa
gtagctaagaaggttcaaaaggtccttgaagttgctgaccttagttcaagagatgttaca
ccatttttgaaagtgagggtgatggggcttgtcagtaaactttctgcttcaacatccagt
aacaagggcgggctaataacaatttggaaccctactgagatgcagaaagccaatcttgtg
gagggacaaatttattctgttacaggattgatgccttcgaataattgtactgaaatcctc
tacttgcatggtagaggatcatctacaacatggaagcccttagcatcaactcagactaca
gattttgaaccattcttcacccctcgtaaagccattgaactgtcaaagtttggtgaggtg
ccactttcaagtgaatttgacattgcaggttttattttatatgttggcaatatgtattta
tgtaacaaccagaaaaggcagtggctctttataacagatggatctaaatttatctccgaa
caaaagtccgaagagcaagattgtcttctagcagttattttttcttccccaaccactggc
gaagactctgcattgtttagtaataccctctctggaaacacagttggttttagtaatctg
gtcaagcgacagaaaaaccagctgaggcacatatgggtagctgatgcaacagagagctct
acctacactctttctcatgagattcctagaaaatctcacctaaaagaagctgcagcttct
gctgagagatgggcttcaagatcttgtcataaaattcaagagctaaaacaaagggtttta
tgtatagttggtgacagtggtggctga
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integrated database retrieval system
