KEGG   Panicum virgatum (switchgrass): 120673991
Entry
120673991         CDS       T07260                                 
Name
(RefSeq) uncharacterized WD repeat-containing protein C17D11.16-like
  KO
K14791  periodic tryptophan protein 1
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pvir03009]
    120673991
Ribosome biogenesis [BR:pvir03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    120673991
  Pre-60S particles
   Other pre-60S particles
    120673991
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_RIG_2nd WD40_RFWD3 WD40_WDHD1_1st Beta-prop_EIPR1 Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_1st WDR55 Beta-prop_TEP1_2nd ANAPC4_WD40 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR75_1st Beta-prop_SCAP WD_LRWD1 Beta-prop_EML Beta-prop_WDR19_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_WDR41 MIOS_WD40 Beta-prop_WDR75_2nd Beta-prop_ACSF4 Beta-prop_DCAF12 PALB2_WD40 BBS2_Mid
Other DBs
NCBI-GeneID: 120673991
NCBI-ProteinID: XP_039810988
LinkDB
Position
5N:complement(69080132..69084795)
AA seq 496 aa
MEDDSLKGMISAISWVPRGAAKNVPVVAEPPTQEEIDEAIKTMALGGGGGSDAEEDDDAG
TMDLDGAEAEEEELDELARAKAVAKALAKGTSKVDDVADELQELNMDAYDDEEEGIEIFS
SGIGDLFYPSNDMDPYLKNNDDDDDDDDDEEIEDKMIKPTDYLIVCAHSDEDIFSLQVNI
LEETEDGEQNMFVHHDVPLPDFPLCTAWMDINLKGGDKGNFIAVGTMDPAIEIWDLDMVD
EVQPHMVLGGLSKKKKKEKGKKGKKYKKGSHRSSVLGLAWNKEVRNVLASASADTTVKIW
DLAVGKCAVTLEHHDDKVQSVAWCPQSPEVLLSGSFDKTVAMNDMKDGGQSCHKWSVEAD
VESLAWDPHNEHSFVVSLENGMVQAFDKRTASSSSSGRSTYTLHAHEKAVSSISFSPSTP
NFLATGSTDKMVKLWDLSNNQPSCIASLNPKLGAIFSVSFSHDNPFWLGCGGSKGKLKVW
DTLTEPAVAKKFGRKK
NT seq 1491 nt   +upstreamnt  +downstreamnt
atggaggacgactcgctcaaggggatgatctccgcgatttcctgggtgcccaggggcgcc
gccaagaacgtccccgtcgtcgccgagccgcccacgcaggaggagatcgacgaggccatc
aagaccatggccttgggcggaggcggcgggagcgacgccgaggaggacgatgatgctggc
accatggacctcgacggtgccgaggccgaggaggaggagcttgatgagcttgcccgggcc
aaggctgtcgcgaaggcgcttgccaagggcaccagtaaggtggacgacgtcgccgacgag
ctccaagaactcaacatggatgcttacgacgacgaggaagaaggtatcgagattttcagc
tcgggaattggggaccttttctatcccagcaatgatatggacccttacctcaagaacaat
gacgacgatgacgacgatgatgacgatgaggagattgaagataagatgatcaagcctact
gattatcttattgtttgtgcacacagcgatgaagatatcttttctcttcaggtcaacata
cttgaagaaactgaggatggtgagcaaaatatgtttgtgcatcatgatgttcctctccct
gattttccgctctgcactgcttggatggatattaatctgaaaggtggtgacaaagggaat
tttattgctgttggaaccatggatcctgccatcgaaatatgggacttggatatggttgat
gaggtgcaacctcacatggttttaggaggactttcaaaaaagaagaaaaaggaaaagggc
aaaaaggggaaaaagtataagaagggaagtcatagaagttctgtgcttggtcttgcatgg
aacaaggaagtcaggaacgttctagctagtgcaagtgcggacacaactgttaaaatttgg
gatttagctgttggcaaatgtgccgtcacacttgaacatcatgatgacaaggttcaatca
gttgcttggtgcccacagtcacctgaagttcttctgagtggatcatttgataaaacagtt
gccatgaatgatatgaaagatggtggacagagttgccataaatggtctgttgaagcagat
gtggaaagtttagcttgggatccacacaatgaacattcatttgtggtaagtcttgaaaat
gggatggttcaagcatttgataagcgaacagcttcatcaagttcttctggccgatccaca
tatactcttcatgcacacgaaaaggctgtttcatctatctccttcagcccgtctacccct
aattttcttgcaacaggctcgactgataaaatggtgaaactctgggatttatcaaacaac
cagccatcatgcattgcctctctgaatcccaagcttggagctattttttcagtatcattt
tcacatgataatcccttctggttaggctgtggaggatccaaaggcaaactaaaagtctgg
gacacgctaacggagccggcagtagctaaaaaatttggcagaaagaagtga

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