Panicum virgatum (switchgrass): 120674006
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Entry
120674006 CDS
T07260
Name
(RefSeq) paired amphipathic helix protein Sin3-like 3
KO
K11644
paired amphipathic helix protein Sin3a
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120674006
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
120674006
REST complex
120674006
Heterochromatin formation proteins
Other heterochromatin formation proteins
120674006
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
HHD_RTEL1
PAH_ZNF598
FidL_like
DUF1722
Motif
Other DBs
NCBI-GeneID:
120674006
NCBI-ProteinID:
XP_039811000
LinkDB
All DBs
Position
5N:11294111..11305222
Genome browser
AA seq
1436 aa
AA seq
DB search
MKRGAREDALMGSQLKRPNLARSDPAAQPQHMPLPGSASAAAPPPQAGAAPPAQPQQPSG
VNQKLTTNDALVYLKAVKDKFQDKREKYEEFLEVMRDFKSERIDTNGVIIRVKTLFNGYP
ELILGFNAFLPKGYAIKLQEEKKPVDFVEAINFVNKIKNRFQHDEQVYKSFLDILNMYRK
DNKSIQDVYQEVAMLFAEHKDLLEEFQHFLPDTSVAPQAVTSSRVGLVKREDRSSLVPPA
NRALPSDKRDRAYLSHADCDFSVDRPDVEHDRQRRRLDKEKERKVERDRRDYEREDKDGE
HDRRELDMQRKRKLFPRKMEDTAGAETHQGAPSENHGIHSVSASSYDDKDALKNVYTHEF
HFCEKVKEKLEHDAYQEFLKCLHIYSQEIITRSELKNLVNDILQHYPDLMEGFNEFLEHC
ENIDGFLAGVFNKRPTARIIKTEDKEKDRERDREDRDRDREKEREKERERLDKGTFNSKE
GASHKPSMFPGKEKYNLSKPISELDLSNCQRCTPSYRLLPKNYPMPPASNRTDLGASVLN
DHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNAATKHVEELIEKMQD
NSVKPESPIRIDEHLTALNLRCIERLYGDHGLDVMDVLRKNASVALPVILTRLKQKQEEW
SRCRSDFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKNLSTKSLLTEIKEINEKKRKEDDV
LLAIAAGNRRPIVPNMLFEYVDSEIHEDLHKIIKYSCGEVCNSSDQLDKVMRIWTTFLEP
ILGVQPRTHGSEDPDLVKAKSRTTKSGLASVGENNTGAGIVAKQGNGDESEQGPSSRARL
ANGVAVDTQNGFHDADRTARRGEEQSNAALNGRLHGAVSAADEVPSISAQNMASTDRSAE
NATAVRIEQQKANLELTAGVNASRSSHDAVETAGEGRAGNEMLTSVEGGQTGRSGSSLNG
TNEGNKGRLNNEGYAPHNSSKVEREEGELSPNGDFEEDHFVPFEDGASKIKEGSTSKPFQ
GRPGDVPSSDAAGENDADADDEGEESAQRSTEDSENASEAGEDASGSESGDGEECSQEDH
DEEEEDMDHDDQDAKAESEGEAEGTTETHDVEGGISLPLSERFLYSVKPLAKHVPTAFND
RDAKSSRIFYGNDSFYVLFRLHQILYERLLSAKTNSFTAEKKWRTSKDTNPPNLYAKFMS
ALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKVVKQLQAIATDEMDNKLLQLY
LYEKSRSSGRFFDLVYHENARVLLHDESIYLFECCSNPTRLSIQLMEYGHEKPEVTAVSI
DPNFSSYLFSEYLCSLSDKKLSEGVYLGRNKRKHSNNDEPSDSLKAMDGIKVVNGLECKI
SCKTSKVSYVLDTEDFLFCLRKRRKVLHGGNVPDRSRISKIYAAKVQRFNRFLSKP
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcggcgccagggaagacgcgctcatggggtcacagctcaagcgccccaacctc
gcccgatccgatccggccgcacagccgcagcacatgcctctgcctggttcagcgtcggcg
gccgcgccgccgcctcaggcgggtgctgctccgccagcgcagccacagcagccgtccggt
gtcaaccagaagctgacgaccaacgatgctctcgtgtacctcaaggccgtcaaggataag
ttccaggacaagcgggagaagtacgaggagttcctcgaggtcatgcgcgacttcaagagc
gagagaatcgacaccaatggagtgattattcgtgtcaaaacccttttcaacgggtaccct
gagctgatccttgggttcaacgccttcttgcccaaaggctatgcgatcaagctacaagag
gagaagaagcctgtagattttgtggaagctatcaattttgtgaataagataaagaatcgg
tttcagcacgatgagcaagtttacaagtcgttcttggacattctcaacatgtaccgcaag
gataataagtccatccaagatgtttaccaggaggttgctatgctgtttgctgaacataaa
gatttgcttgaagaattccagcacttcctgcctgatacctcagtggctccacaagcagtc
acatcttcaagggttggtttggttaagcgggaggacaggagctctctagtgcctcctgcc
aacagggcccttcccagtgataagagggacagggcttatctgtcgcatgctgactgtgac
tttagtgttgaccgtcctgatgtggagcatgaccgccagagaagacgtctcgataaagaa
aaagaacggaaggtggaaagggacagaagagattatgagagagaagacaaggatggtgaa
catgaccgcagagagctggatatgcagcgtaagcgcaagctttttccaaggaagatggag
gatactgcaggtgctgagacacaccaaggagcgcccagtgagaatcatggaatacatagt
gtatctgcttcttcatacgacgataaggatgcgctgaagaatgtatacacacatgagttc
catttctgcgagaaagtaaaggaaaagctggagcatgatgcttaccaggaatttttgaaa
tgtctacacatctacagccaagagattataacgagaagtgaactgaagaacttggtgaat
gatatactccagcattatccagatcttatggaagggtttaatgaattcttggagcattgt
gaaaatatagatggatttcttgctggagtctttaataaaaggcctactgcaaggattatt
aagactgaagataaagaaaaggatagagagcgggatagggaggacagggatagagatcgg
gaaaaggaaagagaaaaggaacgtgaaagacttgataaaggaacattcaattcaaaggaa
ggtgctagccacaaaccgtctatgttccctggaaaagaaaagtacaacctttcaaaacct
atttcagagcttgacctctcaaactgtcaaagatgcactcccagttatcgtctcctacca
aaaaattatcccatgcccccggccagcaacaggactgatcttggagcctctgttctaaat
gatcactgggtatcagtgacatcaggaagtgaagattattcatttaagcacatgcggaag
aatcagtatgaagaaagcttgttcagatgcgaggatgacaggtttgagttggatatgctg
ttggaatcagttaatgcagcaactaagcatgtcgaagagttgatagaaaagatgcaagac
aactcagtaaaacctgagagtcctatacgtattgacgagcatttaactgctttgaacctg
aggtgcattgagcgattgtacggtgatcatggtctggatgtgatggatgttcttcgcaaa
aatgctagcgttgcattgccagttatcctaactaggcttaaacaaaagcaggaagagtgg
tcgaggtgccgatcagatttcaacaaagtttgggctgaaatatatgctaagaactatcac
aagtcgcttgaccatcgtagtttctattttaagcagcaagatacgaagaacctgagcaca
aagtctctcttgacggagataaaagaaattaatgagaagaaaaggaaggaagatgacgtg
ctccttgccattgctgctggcaataggcggcctatagttcccaatatgttatttgagtat
gtagactcggaaatccatgaagatctgcataagatcattaagtactcctgtggcgaagtc
tgcaattcttcggatcaattagataaagtgatgaggatatggacaacttttctagagcca
attttgggtgttcagcctcgaacgcatggttctgaggatccagacctagttaaggccaag
agccgaacaacaaaatctggtcttgcaagtgtcggagaaaataatactggagcagggatt
gttgccaagcaaggcaatggcgatgaaagtgaacaagggccgtcatctcgggctagattg
gcaaatggagttgcagtagacactcaaaatggcttccacgatgcagatcgaactgcccgt
agaggtgaggaacaatcaaatgctgcattaaatggaagattgcacggtgctgtatctgcc
gcagatgaagtgccttccataagtgcccaaaacatggcttctactgacagatccgcagag
aacgcaactgctgttaggatcgaacaacagaaggctaatttggaacttacagcaggtgtc
aatgcgtctaggagttctcatgatgcagttgagacagctggtgaaggcagggctggcaat
gaaatgttgacttctgtcgagggagggcagacagggaggtcgggatcatctttaaatggc
accaatgagggaaataaagggcgcctgaataatgaaggttatgcaccccataattcttca
aaagttgaaagagaagagggtgaattatcaccgaatggagatttcgaagaggaccatttt
gttccttttgaagatggagcatctaaaataaaggaaggttccacaagcaaaccattccaa
ggtaggcctggggatgtaccttcttctgacgcagctggcgagaatgatgctgatgctgat
gatgaaggtgaggaaagtgctcagaggtctactgaggacagtgaaaatgcctcagaggct
ggtgaagatgcatcaggcagtgaatctggtgatggagaggaatgctctcaggaagaccat
gatgaggaagaagaggatatggatcatgatgatcaggatgcgaaggctgaaagtgagggt
gaggcagaaggaacaactgagacacatgacgtggaaggaggaatatcactaccactttca
gaacgttttctgtactcagttaaaccacttgccaagcatgtacctacagctttcaatgac
cgtgatgcgaagtcctcgcgtatattttatggaaacgattcattttatgtcttgtttagg
ctacatcagatcttatatgagagactactttcagcaaaaacaaactcttttactgcggaa
aagaaatggaggacttccaaggatacaaacccacctaatctctatgcaaaatttatgagt
gcactgtacaacttgcttgacggttcttctgacaacaccaagtttgaggatgactgccga
gcaattattggaactcaatcatatgttctcttcactttagacaaactgatttacaaagtg
gtgaagcagcttcaagcaatagcaacagatgaaatggacaataagcttctgcaactatat
ttatatgaaaaatcaaggtcttctggaaggttctttgacctagtttatcatgagaatgcc
cgtgtcctcctccatgatgagagcatatacctgtttgaatgctgctcaaatccgacaagg
ttgtctatccagctgatggaatatggtcatgaaaagccagaggtgacagcagtgtcaatt
gatccaaatttttcttcgtatctttttagcgagtatctgtgtagtttgtcagacaagaaa
ttatctgaaggtgtctaccttggaaggaataagcgaaaacattcaaataatgatgagcct
tcagattctttgaaggcaatggatggtatcaaagttgtaaatggtcttgaatgcaagata
tcctgcaagacctctaaggtctcatatgtcctcgatactgaagatttcttgttctgttta
cggaagaggagaaaagttttgcatggtgggaatgtgcctgacaggtcacggatttcaaaa
atatatgctgcaaaagtgcagcgcttcaatagattcctatccaaaccatag
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