Panicum virgatum (switchgrass): 120674086
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Entry
120674086 CDS
T07260
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1
KO
K18998
RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:
3.1.3.16
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120674086
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120674086
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
120674086
Protein phosphatases and associated proteins [BR:
pvir01009
]
HAD phosphatases
Fcp/Scp phosphatases
120674086
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
120674086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
NIF
DSRM_2
Ribosomal_S5
Motif
Other DBs
NCBI-GeneID:
120674086
NCBI-ProteinID:
XP_039811129
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Position
5N:complement(64381470..64393402)
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AA seq
755 aa
AA seq
DB search
MAAPRPPPLGGPGGGPGGSGGAAPAAGAPAGVSMRMFHGEVFLGEMEVFPMKQGGEGGLP
FPSNEIRVSHLSPPSERCPPLAILQTIAPFSVRCKLQSKLMPPLPSLHRLYLVCFNEFKS
AVVVVGDEELHLVAMPTKSEKAPCFWCCSARSGLYASSVRMLNLRCLAIVFDLDETLIVA
NTMKSFEDRIEMLSRRMDVEDDPVRIAGMSAEIKRYIEDKELLKEFIDTDTVTDNGKIVG
TQKEEVQPVSGGQERVFRPVIRLPERNAILTRINPEIRDTSVFVKLRPAWEELRSYLTAK
GRKRFEVYVCTMAERDYALEMWRLLDPEGNLINPQQLSERITCVKSGSKKSLQNVFRDRG
CHPKMAMVIDDRLNVWDDKDQHRVHVVPAYIPYYAPQAEMANAVPVLCVARNVACNVRGG
FFREFDENLLRKVFELFYENGLLDLPYAPDVGDYLVCEDTNFVPSNKDQAPIPEGMRGAE
VEKRLNGQLYRGEQREGQQMSSSTRSPDDEGMSFRGTGAGRNVQPNGGALAIAPSVFVTV
LQEIGRLCDSKVEFRSTVSNGKSMQFSVEVLFSNEKIGVGIGKTRDEAQVQAAEKALQNL
ESSYLSFVAPIAGVPNKDSRKSPGSGNGFLEDVTCSDVDISMHEPSGSTLKQDHSNNLDK
LSSVMSLIREHCLDDQQVVFRDQVQNSSPARIEEYHFQVELAGQILGRGSGSDRDIAKLL
AAEEALKTLKSTSDPQIKKYLRPVSSLYRFTFSWN
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcctcgcccgccgccgctggggggccctggaggcgggcccggtggcagcggt
ggcgccgcccccgccgccggggcgcccgccggggtcagcatgcggatgttccacggggag
gtgttcctcggcgagatggaggtgttcccgatgaagcaagggggcgaggggggccttccg
ttccccagcaacgagatccgcgtcagccacctctcgccgccgagcgagaggtgcccgccg
ctcgccatcctgcagaccatcgcgcccttctctgtgcgatgcaagctgcagtccaagctg
atgcctcccctcccgagcctccaccgcctgtacctcgtttgtttcaacgagttcaagagt
gcggtggtagtggttggagacgaggagctgcacctagtggcaatgccgaccaagtcggaa
aaggcgccgtgcttctggtgctgctcagcacgctctggcctctatgcatcctcagtcagg
atgctcaacctgcgctgccttgccattgtgtttgatcttgatgagacccttattgttgcc
aatacaatgaagtccttcgaggatcggattgagatgctttcccgcaggatggatgttgaa
gatgatcctgtgagaatagcagggatgtctgcagaaatcaagcggtacatagaggacaag
gagcttctcaaagaatttatagacacagatacagttacggacaatggcaaaatagttgga
acccaaaaggaggaggttcaacctgtgtctggtggtcaggagcgtgtttttcgtcctgtt
atcagactgcctgagaggaatgcaattctgactcgtatcaatccagagattcgtgatacc
agtgttttcgtgaagctaaggcctgcttgggaggagttgagaagctacctaacagcaaag
ggaagaaagagatttgaggtgtatgtatgtacaatggctgagagagattatgctcttgag
atgtggagacttcttgatccagaaggcaacttgataaatccgcaacagctttcagaacgc
ataacttgtgtaaagtcaggttccaaaaagtctctgcagaatgtctttcgagacagagga
tgccatccaaagatggccatggtaattgatgaccgacttaatgtttgggatgataaagat
cagcacagggttcatgttgtcccagcatatattccatactatgccccacaagctgagatg
gcaaatgctgttccagttctttgtgttgcaagaaatgttgcttgcaatgttcgtggtggt
tttttcagagagtttgatgagaatctactgaggaaagtgtttgaactattctatgaaaat
gggttactggatcttccatatgcaccagatgttggtgactacttagtctgtgaggatact
aattttgtaccaagcaataaagatcaggctcctatacctgagggcatgaggggagctgaa
gtagagaagagattgaatggacagttgtatcggggggagcaaagggaaggacagcaaatg
tcatcttcaacccgttcaccagatgatgaggggatgtcatttcgaggcactggagcaggt
aggaatgtccagccgaatgggggcgcactagcaatagccccctcagtatttgtcacggtg
ttacaagaaattgggcgactatgtgactccaaggtggaattcagatctactgtaagcaat
ggcaaaagtatgcaattttctgtagaggttctgtttagtaatgaaaaaattggagtaggc
atcggaaaaacaagagatgaagcccaagttcaagctgctgaaaaagctctccaaaatttg
gagagcagttatttgtcattcgttgctcctattgctggagttcctaacaaagattcaagg
aagtccccagggagtggaaatggctttctggaggatgttacttgttcagatgttgatatt
tccatgcacgaaccttctggaagtacattgaaacaggatcattcaaataatttggataag
ttgtcatctgttatgagtcttattagagaacattgcttggacgaccagcaagtagtgttt
cgagatcaagtccagaattctagcccagccagaatcgaagaataccattttcaggttgaa
ctagctggacagattcttgggaggggttctggttcggacagagatattgcaaagcttctg
gctgcagaagaggcattgaagaccttaaaatctactagtgacccacaaattaagaagtat
ctgagacctgtaagttcgctctacagattcaccttctcatggaactga
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