Panicum virgatum (switchgrass): 120674140
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Entry
120674140 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT5-like
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120674140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120674140
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120674140
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120674140
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
DUF7567
Motif
Other DBs
NCBI-GeneID:
120674140
NCBI-ProteinID:
XP_039811204
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All DBs
Position
5N:799881..802723
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AA seq
314 aa
AA seq
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MDVGSVDCVSLLDAAAPAAVDDAGRGLGTLLAAARASYPKPASAGGVHELLECPVCTNSM
FPPIHQCQNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCQE
IFPYYSKIKHEAQCNFRPYNCPYAGSECAAAGDIPYLVSHLRDDHKVDMHSGCTFNHRYV
KSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEAKNYSYSLE
VGANGRKMIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSSGDRKELKLRITGRIWKE
QQTPDGACIPNLCS
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggcagcgtcgactgcgtctcgctgctcgacgccgccgcccccgcggccgtg
gacgatgccggccgcggcctcggcacgctcctcgccgccgcccgggcctcctaccccaag
cccgccagcgccggcggcgtgcacgagctgctcgagtgccccgtctgcaccaactccatg
ttcccgccgatccaccagtgccaaaatgggcatacgttgtgttcaacatgcaaggctaga
gtgcacaatcgttgccctacatgcagacaagagcttggtgatatcaggtgtttggcattg
gagaaagtagccgagtcgcttgaacttccctgcaagtactactccttgggatgccaagaa
atctttccatactacagcaagataaaacatgaagcacaatgcaacttcagaccgtataat
tgcccctatgctgggtctgagtgtgccgctgctggcgacatcccatatcttgtttcccat
ttgagggatgatcacaaagttgatatgcatagcggttgcacattcaaccacagatacgtg
aaatcgaacccacgagaagtggaaaacgccacctggatgctgacagtgtttcactgcttc
gggcagtacttctgcctgcactttgaggccttccagcttgggatggcaccagtatacatg
gccttccttcgtttcatgggagacgagaacgaggcgaagaactacagctacagccttgag
gtgggtgccaatggcaggaagatgatttgggagggcacccccaggagcgtccgcgacagc
caccggaaggtgcgggacagccatgacggcctcatcatccagaggaacatggccctgttc
ttctccagtggtgataggaaggagctgaagctcaggatcacaggtcggatctggaaagag
cagcagaccccggatggtgcctgtatacccaatctgtgtagctaa
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