Panicum virgatum (switchgrass): 120674262
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Entry
120674262 CDS
T07260
Name
(RefSeq) VAMP-like protein YKT61
KO
K08516
synaptobrevin homolog YKT6
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
120674262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120674262
Membrane trafficking [BR:
pvir04131
]
SNARE
VAMP, Ykt6, Sec22 (R)
Ykt6
120674262
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Gene cluster
GFIT
Motif
Pfam:
Longin
Synaptobrevin
AcrIIA4
Prefoldin_3
Motif
Other DBs
NCBI-GeneID:
120674262
NCBI-ProteinID:
XP_039811347
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All DBs
Position
5N:complement(71569620..71572779)
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AA seq
211 aa
AA seq
DB search
MKITALLVLKSPGDSSSSSSSSSGGGEQQAVVLANAADVSHFGYFQRPAAREFIVFVART
VALRTPAGRRQSVQHEEYKVHCYNQNGLCAIAFTDDHYPVRSAFSLLNMVLEEYQKTFGE
SWRTTKEDATQPWQYLNDALTKYQDPAEADKLLKIQRDLDETKIILHKTIDSVLARGERL
DSLVEKSSDLSAASQMFYKQAKKTNSCCTIL
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcacggcgctgctggtgctcaaatcccccggcgattcctcctcctcctcctcc
tcctcctccggaggtggggagcagcaggccgtcgtgctggccaacgccgccgacgtcagc
cacttcggctacttccagcgacccgccgcccgcgagttcatcgtcttcgtcgcccgcacc
gtcgccctccgcacccccgccggccgccgccagtccgtccagcacgaagagtacaaggtg
cattgctacaaccagaatggcctctgcgccatcgccttcaccgacgaccattaccccgtc
aggagcgccttctccctcctcaacatggtgcttgaagagtaccaaaagacttttggagag
tcatggaggacaaccaaagaggatgcaacccaaccttggcaatatttgaatgatgcccta
acaaaataccaggatccagcagaggctgacaagttgttgaaaattcagagggacttggat
gaaacaaagattattctgcataaaaccattgatagtgtgcttgccagaggtgaaaggttg
gatagcctagtggagaagagttcagatctaagtgctgcctcacagatgttctacaagcag
gccaagaaaaccaactcttgttgtaccatcctgtaa
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