Panicum virgatum (switchgrass): 120674384
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Entry
120674384 CDS
T07260
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120674384
09122 Translation
03013 Nucleocytoplasmic transport
120674384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120674384
03041 Spliceosome [BR:
pvir03041
]
120674384
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
120674384
Spliceosome [BR:
pvir03041
]
Complex C
Other components
EJC/TREX
120674384
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120674384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
120674384
NCBI-ProteinID:
XP_039811496
LinkDB
All DBs
Position
5N:complement(68249521..68267329)
Genome browser
AA seq
1773 aa
AA seq
DB search
MSPPLQAPDYKHITEECLREWKGQSAGAFRLPDPVPMASFLYELCWAIVRGDLPPQKSRV
ALKSVVFVEEAHREEELGSVLADIIAHLGQDITISGEYRSRLVKMTKSFVESSITAPRLL
QERCEEDFLWEVEQSKLKGQDLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQV
GSDLACQNSSSVTISIIKSLIGHFDLDPNRVFDIVLECFEVYPDSNIFHQLIPLFPKSHA
AQILGLKFQYYQRLDVNSPVPSGLFRTAALLVKSGFIDLDNVYSHLLPNDDEAFEHFDSF
ISRRIDEANRIGKINLAATGKDLMDDEKQEVTTDFYTALEMENDIVGERAPEMEKNQKLG
LLLGFLSVHDWHHAQLLFERLAHLNPVEHIEICDGLFRMIEKTMSSAYDIVCQLYYYLPP
KNDADQTVTSALSLCSFDLPKEFFQMLTACGPYLHRDTQLLQKVCRILKAYYHSSKESTR
AANVVSPEFRIEEALGSCLFPSLQLIPANPAVDMEIWGVLSLLPYEARYRLYGEWEKETE
QNPIVLAARQTAKLDTRRLLKRLAKENLRPLGRMVAKLAHANPMTVLRTIVQQVEAYRDM
ITPVVDAFKYLTQLEYDILQYIVIERLAQGGRAKLKDDGLNLSDWLQCLASFWGHLCKKH
NAVELKSLLQYLVNQLKKGVGIELVVLEELIQQMANVQYTENMTEEQVDAMAGSETLRQQ
ASLFGATRNYKVLSKSTNRLRDSLLPKEEPNLAVPMLLLIAQHRSKIIINADATYIKMVS
EQFDRCHGILLQYVEFLTSAVTPIAYAQLIPPLQDLVHKYHIEPEVAFLIYRPVMRLFKS
TNGGDTCWPLDDNEEGESVSSDDLILHLDSSQEPIMWSDLINTVRSILPAKAWNSLSPDL
YATFWGLTLYDLHFPKDRYDTEIKKLHENLKQLEDNSDNSSIAISRRKKDKERIQDLLDK
LNSESQKHQQHIASVVQRLAREKDKWLSSSPDALKINMEFLQRCIFPRCVFSTQDAVYCA
TFVQTLHSLGTPFFNTVNHIDVLVCKTLQPMICCCTEFEAGRLGRFLHDTLKMAYYWKSD
ESVYERECVNKPGFAVYFRYPNSQRVSYSQFVRVHWKWSSRITKALNQCMESKEYMEIRN
ALIVLTKISSVFPVIRKSGVNLEKRVAKLKGDEREDLKVLATGVAAALAARKSSWLSEEE
FGMGHIDLKPATTRSVPGNQSADPSTAKDQNARAKSESRHERLEGAIKPDVQQKKSSVSA
IGYDNQIPSSAVQGKSSGVVRVADEPPKPVSDEGVKVSAKPSSESETRAPQKRAAHNAGK
VLKHDVAKEDGKAGKSTSRNSNQQASTVPVDREASQAVDSVQDTNSASSNGNMHPAPRKV
SSSQRNAMLATHNGAVNPSGESTDLTDSTVRQQKRSVPAEEQDRSSKRRKGEAEPRDTDF
SEHHIDKEKSLDSRAGDKFRSVDHEKSANEEQNLSRAEKIKDKFDDKYDRDPREKLDRAE
RRRGEDAIDRATDRLSDRRERSIERMQERVSDKAPEKGREDRNKDERNKGKYAEPSVDRT
HSTDERFRGQSLPPPPPLPTSFVPQSVGANRREDDTDRRGGSVRHIQRSSPRRDEKERRQ
SEENASSFQDDGKHRREEDLRDRKREDRDVLSNKVDDRDREKGTAMKEDSDPNSASKRRK
IKREQSSLEAGEYAPSAPQPPSHGTGSSQVSDVRERERKGPISQHRSLHNDDLPRMHGKD
TSKQSRREADQMHDREWEEEKRPRTETKRKHRK
NT seq
5322 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccccctctgcaggcgcccgactacaagcacatcacggaggagtgcctccgcgaa
tggaagggccagtccgccggcgccttccggctccccgatccggtccccatggcgagcttc
ctctacgagctctgctgggcgatcgtgcgaggcgacctgccgccgcagaagagccgcgtg
gcgctgaagtcggtggtgttcgtggaggaggcacatcgggaggaggagctcggctcggtg
ctcgctgatatcatcgctcacctagggcaggatattacaatctccggtgaatatcgcagc
cgtcttgttaaaatgactaagtcatttgtggaatcctcaattaccgcacctaggcttctg
caagaacgatgtgaagaagatttcctttgggaggttgaacagagtaagctgaaaggccaa
gatttaaaatccaaggaggttagggtcaacacacggcttctttaccagcaaactaaattc
aacctcttacgagaggaaagcgagggctatgctaagttggtgacactcctttgtcaagtt
ggttcagatctggcctgccagaattcttcttcagttacaatcagcattataaagtcattg
attggtcattttgatctggatccaaatcgtgtatttgatattgtgttggaatgttttgaa
gtctatccagatagtaacatctttcatcaactcattcctcttttcccaaagtcccacgct
gctcaaattttggggctcaaatttcagtactatcaacgattggatgtcaacagccctgtt
ccatcaggacttttcagaacagcagctttattagtcaaatctggtttcattgatcttgat
aatgtctattctcacttgcttccgaatgatgacgaggcatttgagcattttgattctttc
atttcaagaagaattgatgaggctaatagaattggcaaaatcaatcttgctgctacagga
aaggaccttatggatgacgagaagcaagaagtgactactgatttttacacagcattggag
atggaaaatgatatagttggggagcgagcccctgagatggaaaagaaccagaaacttggg
cttcttcttggttttctctctgtgcacgattggcaccatgcacaactactcttcgagcgt
cttgcacacctaaatcctgttgagcatattgaaatttgtgatggactatttagaatgatt
gaaaagacaatgtcttcagcctatgatatagtttgtcaactgtattattatttacctcct
aagaatgatgctgatcagactgtcacatctgctctgtccctatgttcatttgatctacca
aaagagtttttccaaatgctcaccgcttgtggaccatatcttcatcgtgatacccaatta
cttcaaaaggtttgcagaatactaaaagcatactaccactcatcaaaagagtctacacgt
gcagcaaatgtagtttcaccagaatttcggattgaagaggcacttgggtcgtgcttgttt
ccttcactgcagcttatccctgccaatcctgctgttgatatggagatatggggggttctt
tcacttcttccttatgaggcacgctaccgtctatatggtgaatgggagaaggagaccgaa
caaaacccaattgtccttgctgcaaggcaaactgcaaagctggataccagaaggctcttg
aaacggctggctaaggaaaacctgaggccacttgggcgcatggtggctaaacttgctcat
gcaaatccgatgactgtgcttcggacaattgtccaacaggtcgaagcgtatagggatatg
atcacgccagttgtggatgcttttaagtacttgactcagctggagtatgacatcttgcaa
tatattgtaattgaacgcttggctcaaggtggccgtgcaaaactcaaagatgatggtctt
aacctgtcagattggcttcaatgtctagcatccttttggggccacctgtgcaaaaagcat
aatgctgtggagctgaaaagccttttgcagtaccttgttaatcaactaaagaagggtgtg
ggcattgaacttgttgtcctggaggagctcattcagcaaatggcgaatgtgcagtacact
gagaacatgacggaggaacaagttgatgctatggcaggaagtgagactttgcggcagcaa
gcttcactatttggagcaacaaggaactataaggtgttgagtaagtctacaaacagattg
agggattcattgcttccaaaagaagagcccaaccttgcagttcctatgttactgcttatt
gctcagcatcgatccaagatcataataaatgctgatgcaacatatatcaaaatggtcagt
gagcagtttgatagatgccatggaatacttcttcagtatgttgagtttcttacaagtgcc
gtaactccaatcgcctatgctcaactaatacctcctttgcaagatctggtacacaaatac
cacattgagccagaggttgctttccttatataccgcccagtgatgcgactttttaagagc
actaatggtggtgacacttgttggcctcttgatgataacgaggaaggagaatctgtatca
tctgatgatcttatcttgcatcttgactcatctcaggaaccaatcatgtggtcagatctt
attaacacagtccggtcaattttgccagcaaaagcttggaacagtctttcaccagattta
tatgctactttctggggcttaacgctctatgatcttcacttcccaaaagaccgttatgat
acagaaatcaagaagctgcatgagaatctcaaacaattggaggacaactcagataactct
agcattgcaatttcaagacggaagaaggacaaggagagaatccaagatttactcgacaaa
ttgaacagtgaatctcagaagcaccaacagcacattgcatctgtggtccaaaggctagcc
cgtgaaaaggataagtggttgagttcgagtccagatgcactgaagattaacatggagttc
ctacagcgctgcatatttccacgctgtgtttttagtacgcaggatgctgtatattgtgct
acatttgtccaaacactacactcacttgggactccattctttaacacagtcaatcatatt
gatgtccttgtctgtaagaccctacagccaatgatatgctgttgcacagaatttgaagct
ggcaggcttggaaggtttcttcatgatacattgaagatggcctactattggaagagtgat
gaatctgtgtatgagcgtgaatgtgtaaacaaaccgggttttgcggtatacttcagatac
ccaaacagccagagggtatcttatagtcagtttgttcgggttcattggaagtggagttca
agaatcaccaaggcgcttaaccaatgcatggaatcaaaagaatacatggaaatccgaaat
gcccttattgtgcttacaaaaatttctagtgtctttcctgtgattcgtaaaagtggtgtc
aatcttgagaaacgggtggctaaacttaaaggggatgagagagaagatctcaaagttctt
gctactggtgtagctgctgctttagctgctcgcaagagttcttggctatctgaagaagag
tttggcatgggccacattgatctgaagccagcaacaacaagatctgtgcctggaaaccag
tcagcagatccctcgacggcaaaagatcaaaatgctcgtgcaaagtctgaaagtaggcat
gaacggttagaaggtgctattaagcctgatgttcaacaaaagaagagctctgtgtccgca
attggatatgataatcaaataccatcttccgccgtacaagggaaatcttcaggggttgta
cgtgtagcggatgaacctccaaaacctgtatctgatgagggggttaaggtctctgcgaag
cctagttcagaatctgagacaagggcaccacaaaagcgtgctgcacataatgctgggaag
gtactgaagcacgatgtggcaaaggaagatggaaaagctggaaaatctaccagccggaat
tcaaatcaacaagcctctactgttcctgttgacagagaagcttctcaggcagttgattct
gtccaagataccaattctgctagtagcaatggtaacatgcatccagcgccgcggaaagtt
tcatcctcccaaagaaatgcaatgttggctacacataatggagcagttaatccctctggt
gagtctactgatctgactgactctaccgtgagacagcaaaaaagatctgttccagctgag
gagcaagatagatcaagcaaacggaggaaaggagaagctgaaccccgagatactgatttc
agtgaacaccatatagacaaggaaaagagtttggactcacgtgccggagataagtttcgt
tctgtggatcatgagaagagtgctaatgaggaacagaacttgagtagggcagaaaaaata
aaagataaatttgatgataaatatgacagagatcctagagaaaaattggatcgagctgaa
aggcgccgtggggaagatgccattgacagagcaacagatagattatcagatcggagagaa
cgttctattgaaaggatgcaagagagagtttcagataaagctcctgaaaaaggaagagag
gatagaaataaggatgagaggaataaaggtaaatacgctgaaccttcagttgaccggaca
cattctactgatgaacggttccgagggcaaagtctgccaccacctccacctcttcccaca
agttttgtaccccaatcagttggtgccaaccgaagagaagacgacactgaccgaaggggt
gggagtgttaggcatattcaaaggtcatctcccaggcgtgatgagaaagaaaggaggcag
tcagaggagaatgcttcgtcatttcaggatgatggaaaacatagaagagaggaggatctt
cgtgatagaaagcgtgaagatcgggatgttctatcaaataaggtagatgacagagacagg
gaaaaagggactgctatgaaggaagacagcgacccaaacagtgcttccaaacgaagaaag
attaagcgagaacagtcttctttagaagctggggaatatgcaccttctgctcctcagcct
ccttcccatggaactggcagctcacaagtatctgatgtacgagaacgagaaagaaaaggt
ccaatttcacagcatcgcagcttgcacaatgatgaccttcctaggatgcatggcaaggat
acaagcaagcaaagtcgtcgagaggctgaccaaatgcatgatagggaatgggaagaggaa
aagcgaccaagaactgaaacaaaaaggaagcaccggaaatag
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integrated database retrieval system
