Panicum virgatum (switchgrass): 120674478
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Entry
120674478 CDS
T07260
Name
(RefSeq) AMSH-like ubiquitin thioesterase 3
KO
K11866
STAM-binding protein [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120674478
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120674478
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120674478
04121 Ubiquitin system [BR:
pvir04121
]
120674478
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120674478
Peptidases and inhibitors [BR:
pvir01002
]
Metallo peptidases
Family M67
120674478
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Others
Others
120674478
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
120674478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP8_dimer
JAB
Prok-JAB
Motif
Other DBs
NCBI-GeneID:
120674478
NCBI-ProteinID:
XP_039811589
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All DBs
Position
5N:7271668..7277166
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AA seq
478 aa
AA seq
DB search
MGPAQQRGGAFDVKALAPAIAVDHSIRLPNYFRIADSLLTQANVYRKEKNLIQLYVLLLR
YSSLVHETIPKHRDYHLFKSGEKDYYFRKKLLDVIDELELLKPVVHQRIAELDVGDISEP
HCLNGTYAASCRIDKHSSDSNAPKDVMRHQMASSPSIKPVGQICKQNIGLPYPKEDTLAR
HSILGPDGLSGQRVGSVVAMKVQYPTNNEITQSDMSSLLPAILNQDGLNGDSKALLYGSK
TDNEIGLSVPVEEELYQLSIQQPSYPPMLSQVHVDRPIFSSRVADSKPECAISDIDHYRR
VDVPDELTACFLKAAEANTIKTLETCGLIFGALLMDPEVGEYFKVTALIIPKQKSTSDTC
EATCEEEIPEVVQSIGSPYQLGWIHTHPTQDCFMSSVDLHNHYSYQKELHEAFAIVLAPS
KESKKDREKIFQLTDPGGMHAIGDCAKRSFHPHDLATYKECSHIKLKSALAFRVIDLR
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggggccggctcagcaacgcgggggagctttcgacgtcaaggcattggcgccggccatc
gccgtcgaccacagcatcaggctccccaactacttccgcatcgccgacagcctcctcacc
caggctaacgtatatagaaaggagaagaacctcatccagctgtatgttcttcttctgaga
tactcgagccttgtgcacgagactattccaaagcatcgtgactaccacttgttcaagtca
ggagaaaaggactactacttcaggaagaaattattggatgtcatcgatgagctagagttg
ctgaagccagttgtgcatcagaggattgcagagcttgatgtgggtgatatttcagagcct
cattgtttaaatgggacctatgctgcgagttgcaggattgacaagcattcgtcagactca
aatgcaccaaaggatgttatgagacatcaaatggcatcatcaccgagtatcaaacctgtc
gggcagatctgcaaacaaaatattggtctaccttatccaaaagaagatacactagccagg
cactccatcttagggcctgatggactttctgggcagcgagtaggatctgttgttgcaatg
aaggtccagtatccaactaataacgaaataacacaaagtgatatgtctagtttactacca
gctatcttgaaccaagatggcttgaatggcgacagtaaagcattgctgtatggctccaaa
actgacaatgaaatagggttgtctgtgccagtagaagaagaattgtaccaactcagtatc
caacagccttcttacccaccaatgttgtcacaagtacatgtggatcgaccaatattttcc
tcaagagttgctgattcaaaaccagagtgtgctatctcagatattgaccattatcggcgt
gtggatgttccagatgagttgacagcatgtttcctaaaggctgctgaggcaaataccata
aaaactctagaaacatgtgggcttatttttggtgcactgctcatggacccagaggtaggc
gagtattttaaggtgacagccttgataattccaaaacagaaatctacaagtgacacgtgc
gaagctacatgtgaagaagaaataccggaagttgttcagagcatcggctcaccttaccag
cttggttggattcatacacatccaactcaggactgttttatgtcttctgttgatctccat
aatcattattcgtatcagaaggagctgcacgaagcatttgcaatagttctggcaccttca
aaagaaagcaaaaaagaccgtgagaaaatatttcagctcacggatccaggtggtatgcat
gcaattggtgattgcgctaagaggagtttccatccgcatgacttggcaacctacaaggaa
tgctcccacataaagttgaagtctgctttagcttttcgtgttattgaccttcgataa
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