Panicum virgatum (switchgrass): 120674992
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Entry
120674992 CDS
T07260
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120674992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120674992
03012 Translation factors [BR:
pvir03012
]
120674992
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120674992
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120674992
Translation factors [BR:
pvir03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120674992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
Helicase_C
DEAD
HA2_C
OB_NTP_bind
HA2_N
Ank_2
Ank_5
nSTAND3
ATPase
AAA_22
AAA_19
Ank
AAA_23
AAA_25
AAA_16
R3H_PUS7L
Rad17
NPHP3_N
PhoH
Motif
Other DBs
NCBI-GeneID:
120674992
NCBI-ProteinID:
XP_039812016
LinkDB
All DBs
Position
5N:58441659..58455244
Genome browser
AA seq
1290 aa
AA seq
DB search
MATGRVDRARGIASAYGDPVWAHGSWLVWAAWALQTWKPGTRESHVGRFHTVTRSRFSLG
APRQRRVTEATAAGAKHRRSCQTARAAPKEAAQPQRQPRGDDEDDRMGRKGRKGKSAAAS
MNEATLVRVNKVLEDFRASDAEVYTFEPDISKEERAAIHEMCRKMGMKSKSSGFGTQRRL
SVYKNKRNQGLDMEEGPTHLGFSEESRHVLQDLFTHYPPDDADLNGDANRNSSDKAANIK
WKTDSAFCKPAMSKHDITKKVEMFSTKINGSPQLRKIMEDRSKLPISSFKDVITSTLDDH
QVVLISGETGCGKTTQVPQYILDHMWGKGESCKIICTQPRRISAISVAERISAERGEAVG
DTVGYKIRLESKGGKNSSVMFCTNGVLLRVLIGRGTNTSKTRNPKSLDDAIMGISHIIVD
EIHERDRFSDFMLTILRDLLPVYPHLRLVLMSATIDAVRFSQYFNGCSVIQVPGFTYPVK
TYYLEDVLSILQSVGDNHLSTTTSDKKQRSVLTEDFKSSMDESINLALVNEEFDPLLELI
SAEQNPEIYNYQHSETGVTPLMVFAAKGQLGDVCMLLSFGVDCSAQDHDGKSALDWAQQE
KQQEVYEVIMKHVECSSAKLTEDNELLNKYLATINPEHIDTMLIERLLGKICVDSDEGAI
LVFLPGWEDINQTREKLRASPFFRDSSRFLVLSLHSMIPSSEQKKVFKRPPAGVRKIILS
TNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLHASWVSKASARQREGRAGRCQAGV
CYHLYSRFRAASLPDYQIPEIKRMPIEELCLQVKLLDSNCRIADFLKKTLDPPIPESVRN
AITVLQDLGALTQDEQLTELGEKLGSLPVHPSTTKMLLFAILMNCLDPALTLACAADYRD
PFLLPMAPDERKNATAGKVELASLYGGFSDQLAVVAAFDCWRRAKDRGQESQFCTKYFIS
SSIMQMLANMRKQLQSELYQRGFVPADTSACSLNSNDPGIMRAVLMAGAYPMVGRLLPPR
KNVKKTIVETASGGKVRLHPHSCNFNLSFSKSSGNPLLVYDEVTRGDGGMHIKKCSVVGS
CPLLLLASEMVVAPPDDDSDEEEDSSEDEAGKSTLAQHRKEIMSSPDNTVSVVVDRWLRF
DASALDVAQFYCLRERLASSILFKVKHPQDVLPPALGASMYAIACILSYDGLPDMCPSND
LLQNPVEARRFSLGKRGYIPPGGYLRSFADRPHHAPHFQNLANHPGGDPAYTQPSRAPVG
RFDQSQRSFRNSGPGSSKPRSFKRQRNTAL
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atggcaactggtagagtggatcgcgcgcgaggaatagcctccgcgtatggggatcccgtt
tgggctcatggctcatggcttgtttgggctgcttgggccttgcaaacttggaagcctgga
acgcgcgagtcgcacgtgggccgcttccacacggttactcgctctaggttttccctcggc
gcaccgcgacagcgccgcgtcaccgaagccaccgccgccggggcaaagcaccgccgctcc
tgtcaaaccgcgcgcgccgcacctaaggaagcagcccagccacagcgccagcctcgcggc
gacgacgaggacgaccggatggggcggaaggggcggaaggggaagagcgcggctgcctcg
atgaacgaggcgacgctggtgcgcgtcaacaaggtgctggaggacttccgcgcctccgac
gccgaggtgtacacatttgaacctgatatatccaaagaagagcgagcagcaatccatgag
atgtgtagaaaaatgggcatgaaatcaaaaagttctgggtttgggacacagcgacgcctc
tctgtttataaaaataaacggaaccaggggcttgatatggaagaaggccctacccacctt
gggttttctgaagagtcgagacatgttttgcaggatttgtttacgcattatcctcctgat
gatgctgatttaaatggagatgccaaccggaattctagtgataaggctgcaaacatcaaa
tggaaaacagatagtgccttttgcaagccagcaatgagcaaacatgatataacaaagaaa
gttgagatgttttccactaaaataaatggatccccacagttgaggaagatcatggaagac
agatcaaagcttcctatttcatcctttaaggatgttatcacttcaactttggatgatcac
caggtggttcttatttctggagaaacaggctgcggtaaaaccacccaggttccgcaatac
atcttggatcatatgtggggcaaaggtgaatcatgtaagatcatatgcactcaaccacgt
cggatatcagctatttcagttgctgagcgaatctctgctgaaagaggagaggctgttggt
gatacagttggatataagatacgtctggagtcaaaaggagggaagaattcatcagtcatg
ttctgcacaaatggtgttcttttgagagtactgataggaagaggaactaacacatcaaaa
acacgaaatccaaagtcactggatgatgcaattatgggaatatcacacatcattgtggat
gaaatccatgaaagggataggttttctgatttcatgctgactattctaagagatttgttg
ccggtgtatcctcatcttcgtttggtgctgatgagtgcaacaatcgatgctgtgaggttt
tctcaatacttcaatggatgctcagtcattcaagtccctgggtttacctatcctgtcaaa
acttactatttggaggatgtgctttctattctgcaatctgtgggtgataatcatcttagt
accacaaccagtgataaaaaacagcgcagtgttttaactgaagattttaaaagctcaatg
gatgaatcaattaacctagctttggtcaatgaagaatttgatcctctccttgagcttatt
tctgcagagcagaacccggaaatctacaactatcagcattcagagactggtgtaacacct
ttaatggtttttgctgcaaagggtcagctaggggatgtctgtatgcttttatcttttggt
gttgattgttcagcacaggatcatgatggaaaatctgcattagattgggcacagcaagaa
aaacaacaagaggtttatgaagtaatcatgaaacatgtggagtgtagttcggcaaaatta
actgaagataatgagctgcttaataagtacttggcaactattaacccggagcacattgat
actatgctaatagaacggttgcttggaaaaatttgtgtggattccgatgaaggagctatc
ttggtatttcttcctgggtgggaagatatcaatcaaacacgggaaaagttacgtgcttcg
ccattctttcgggattcatcaagatttcttgtgctatcacttcattcaatgatcccgtct
tcagagcagaaaaaagttttcaaacgtccacctgcaggagttcgtaaaattattctctca
accaatattgcagagactgctgtgacaattgatgatgttgtgtttgtcatagatagtggt
agaatgaaagagaaaagctatgatccatacaataatgtgtccacacttcatgcttcctgg
gtttcaaaagctagtgcaagacaacgtgaagggcgtgctggtcgttgtcaggcaggagtt
tgctatcatctttactcgaggtttagagcagcatcattgccagactaccaaattcctgaa
ataaaaagaatgccgatcgaagaactttgtttgcaggtcaaactacttgattcaaactgc
cgaatagccgattttctgaagaaaacattggaccctccaattccagaatctgtaagaaat
gccattactgtgcttcaggatcttggtgcgttaacacaagatgaacaactaacagagtta
ggtgaaaaactgggttctcttccggtccatccatccacaaccaagatgctcctgtttgct
atattaatgaactgcctggatccagcattgacattggcatgtgcagcggattatagagat
ccattcctccttccaatggctccagatgagaggaaaaacgcgactgcagggaaagttgag
cttgcttcattgtatggtgggttcagtgaccagcttgctgttgtggcagcattcgactgc
tggaggcgtgccaaagatagaggccaagaatctcaattttgtacgaagtactttatctct
tcgagcatcatgcagatgctagcgaacatgaggaaacagcttcagagtgaactgtatcaa
agagggtttgttcctgcagatacatctgcctgcagcttaaactcaaatgatccaggtatc
atgcgtgctgttcttatggctggagcttacccaatggtagggagattgctacctcctcgc
aaaaatgttaaaaaaacaattgtggaaacagcaagtggtggcaaagttcgtcttcatcca
cattcgtgcaattttaacctatcatttagtaaatcttctgggaacccactactggtatat
gatgaagtcactcgaggtgatggtggaatgcatataaaaaaatgctcagttgttggttca
tgtccattgcttctgctcgcttcagaaatggttgttgctccacctgatgatgatagtgat
gaagaggaagattccagtgaggatgaagctgggaaaagcactttggcacagcacagaaaa
gagattatgtcttctcctgataacactgtttcagttgttgttgatcgttggcttcggttt
gatgcttcagctctggatgttgctcaattttactgcttaagagaacgtttagcatcttct
attcttttcaaagtgaaacatcctcaagatgttctcccaccagcccttggagcatcaatg
tatgccatcgcatgcatcctctcatatgatggcttgcccgatatgtgtccatccaatgat
cttttacagaatccagtggaagctagaagattctccctggggaagagaggctatattcca
cctggtggttacctcaggtccttcgctgataggccacatcatgcacctcattttcaaaac
ttggctaaccatccaggaggtgatccagcgtatactcagccatccagggctcccgttggc
aggtttgatcaatcccagcgttcttttcgaaattctggacctgggagttccaagccacgg
tctttcaaaaggcagcgcaacacagcactgtaa
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integrated database retrieval system
