Panicum virgatum (switchgrass): 120675258
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Entry
120675258 CDS
T07260
Name
(RefSeq) YTH domain-containing protein ECT2-like isoform X1
KO
K20102
YTH domain-containing family protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120675258
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120675258
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Gene cluster
GFIT
Motif
Pfam:
YTH
Motif
Other DBs
NCBI-GeneID:
120675258
NCBI-ProteinID:
XP_039812305
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Position
5N:51558205..51564382
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AA seq
591 aa
AA seq
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MEPKGEPGQKPIEEAMDSLKIDASTKASNVNLPAKKDASSSDAVSCISSGDAASTVKESE
MNQEASTGDQGMYYYGYYYPGSYGGWDENGCFVGYNGLEMHPAVVQGDNGPYSCYLPGYE
NGYASYSPVVPGGVTSADGQYVSKEPYYSTAIPMPDPSTPGIFAQQIAYGPELVPAYSWD
PSFVLLDGVQGHPVGVHHTNYAARPKYSSNKHGVPSSKAARSAKAAPETIKGSSSALEPL
PNAANSNLLSKAANKASGASIAKGYLPSSKFVTHNNNQGKIGVYQNKGINVKESGRSWTN
SDKLKTKSKLNGHGDSDISNENSHTDDSRHSLSPRGDVVGLSCTGDANNTIPSPVTISKN
AYNLPDFVTKYEQALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDNAYRLAQERMAEK
GTKCPVFLFFSVNASGQFCGVAEMVGPVDFNRNMNFWQQDKWNGFFSVKWHIIKDVPNPQ
FRHIILENNENKPVTNSRDTQEVKFPQGTEMLNIFKNFSCKTSILDDFDFYENRQKVMQD
RRSKPLTTSFDHPLAKAEICTNVGMVPDTTKKNEEQRNDVAEVPSKVATEG
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggagcccaagggcgagccgggccagaagcctatcgaagaagcaatggacagcttgaag
attgatgctagcacgaaggcaagcaatgtcaacttgcctgctaagaaagacgcaagttct
tctgatgcagtatcttgcatttcctcgggcgatgccgctagtactgtgaaggaaagtgaa
atgaaccaagaagcttctactggggaccaagggatgtattactacggatattactatcct
ggctcatatggaggatgggatgaaaatggctgctttgttggttataatggtctagagatg
cacccagcagtggttcaaggcgataacgggccatattcgtgctatctcccggggtatgaa
aatgggtatgcttcttatagtccggttgttcctggtggcgttactagtgcggatggtcaa
tatgtcagcaaagagccatattactccactgcaattccaatgccagatccaagcacacct
ggcatttttgctcaacaaattgcttatggacctgaactagtccctgcatactcatgggac
ccttcttttgttcttctggatggggttcagggacatccagttggtgtgcatcatacaaat
tatgctgcaagaccaaagtattcttctaataagcatggtgttccttcttccaaagctgcc
cgcagtgcaaaagctgctccagaaactatcaaaggatcatcatcggctctagaaccttta
ccaaatgctgcgaatagcaacctattatcaaaggctgcaaataaggcatctggtgcttcc
atagcaaaaggatatcttccatctagcaagtttgtgacgcataataataaccaaggaaaa
atcggtgtttatcaaaacaaaggcatcaatgtgaaagaaagtggtagaagctggaccaac
agtgacaagcttaagacaaaaagtaagctaaatggacatggtgattctgacatatctaat
gagaatagccacactgatgactcaagacacagtttaagccctcgaggtgatgttgttgga
ttgtcatgtactggagatgctaacaataccataccttcacctgtcacaataagcaaaaat
gcatataatcttccagattttgttacaaagtatgagcaagctctattctttgtaattaaa
tcttacagcgaagatgatattcacaagagtatcaagtacaatgtctgggcaagtactcct
aatggaaataaaagacttgacaatgcctatagacttgcacaggaaaggatggcagaaaaa
ggaaccaaatgtcctgttttccttttcttctctgttaatgccagtggtcagttctgtggt
gtggctgagatggttggtccagtagattttaacaggaacatgaacttctggcaacaggac
aagtggaatggtttcttttcagtaaaatggcacattatcaaggatgtgcctaatccacaa
tttcgccacataattttggagaataatgagaacaaacctgtgacaaatagcagggacaca
caagaggtcaaatttccacaaggtacagagatgctgaacattttcaagaacttctcatgt
aaaacatcaatattggatgactttgacttctacgaaaatcggcagaaagtaatgcaggac
agaaggagcaagccacttactacatcatttgatcacccattggcaaaagctgaaatatgc
actaatgttggtatggtacctgatacaaccaagaaaaatgaggagcagagaaacgatgtt
gcagaagtacccagcaaggttgcaacagaaggatga
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