Panicum virgatum (switchgrass): 120675264
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Entry
120675264 CDS
T07260
Name
(RefSeq) long chain acyl-CoA synthetase 4-like isoform X1
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00061
Fatty acid biosynthesis
pvir00071
Fatty acid degradation
pvir01100
Metabolic pathways
pvir01212
Fatty acid metabolism
pvir04146
Peroxisome
Module
pvir_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
120675264
00071 Fatty acid degradation
120675264
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120675264
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pvir01004
]
120675264
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120675264
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
120675264
Lipid biosynthesis proteins [BR:
pvir01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
120675264
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of breast milk
120675264
Exosomal proteins of breast cancer cells
120675264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
120675264
NCBI-ProteinID:
XP_039812315
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Position
5N:complement(51631418..51637107)
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AA seq
691 aa
AA seq
DB search
MQHLVQVEEGREAADGAPSAGPTYRCAAGDKGAAPGLDCCWDIFRLSVEKCPGNKMLGRR
EIVDGKVCSRTRASPSLSPPGACLRFSVFPVPPWIHWRLRLLRKAGNYTWLTYKEVYDTV
IKVGAAIRSCGVGKGGRCGIYGANSPEWVISMQACNAHGVYCVPLYDTLGAGAVEFVLCH
AEVQIAFVEEKKIGEILKTFPNSTKFLKTIVSFGKVNPEHKEKVEENGLSIYSWEQFLQL
GGEEKFELPPKEKDDICTIMYTSGTTGDPKGVLISNKSIITIVSAVDEFLRISGEELRED
DVYISYLPLAHIFDRVIEEVFIHHGASIGFWRGDVKLLVEDIGELKPTVFCAVPRVLDRI
YGGLQDKITTGGFLKKTLFNVAYKYKQGNMLKGSKHDEAAAVFDKLVFTKVKRGLGGRVR
LILSGAAPLSRHVEEYLRVVTCSHVLQGYGLTETCAGSFVSLPNNMSMLGTVGPPVPYVE
VRLESVPEMGYDALSSETPRGEICIRGDTLFSGYYKREDLTKEVMVDGWFHTGDIGEWQP
DGSMKIIDRKKNIFKLSQGEYVAVENLENIFGQTPGVDSVWVYGNSFESSLVAVVNPNKQ
ALERWAESNGVTGEFATICEDPKAKEFILGELTKMGKEKKLKGFELIRAVHLDPVPFDMD
RDLITPTYKKKRPQLLKYYQSVIDGMYQSMK
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgcagcacctggtgcaggtggaggaggggagggaggcggcggacggggcgccctcggcg
gggccgacgtaccgatgcgccgcgggggacaagggcgccgcgccggggctcgactgctgc
tgggacatattccgtttgtccgtcgagaagtgccccggcaacaagatgctcggccgccgc
gaaatcgtcgacgggaaggtttgtagccgcacgcgagcctctccatctctctcaccacct
ggtgcttgcttacggttctctgtgtttcctgttcctccctggattcattggcgtctccgt
ctcttgcgtaaggctggcaactacacgtggctgacctacaaggaggtttacgacaccgtg
atcaaggtcggggctgcgatccggagctgcggcgtcggcaagggtggccggtgcggcatt
tatggggccaactcgcctgagtgggttatcagtatgcaggcctgcaatgcccatggcgtc
tactgtgttccattgtatgacacgcttggtgccggggcagtagaatttgtattgtgccat
gcagaggtacagattgcttttgttgaggaaaagaagattggggagatactcaagacattt
cccaattcaaccaaatttttgaagacaattgtgagcttcggtaaggtcaatcccgaacac
aaggaaaaagttgaagagaatggcttatccatctactcgtgggaacagtttctgcaactg
ggaggtgaagagaagtttgaactcccaccaaaggaaaaggatgacatatgcacaataatg
tatactagtggcacaactggtgatcctaagggagtattaatctccaacaagagcatcatt
accattgtttcagcagtagatgagttccttagaatctcaggcgaggagcttcgcgaggat
gatgtttacatatcttaccttccgcttgctcatatctttgaccgggtgattgaggaggtg
ttcattcaccatggtgcttcaattggattttggcgtggggatgttaaactcttggttgaa
gacattggcgaactcaaaccaacagtattctgcgctgttccacgtgttctggacaggatt
tatggaggattgcaagataaaatcacaactggtggtttcttgaagaagaccttgttcaat
gttgcttacaaatacaaacaaggtaatatgttgaaaggaagcaagcatgacgaggctgct
gcagtgtttgacaaactggtcttcaccaaggtgaaacggggactaggtggcagggttcgg
ctgattctatcgggtgctgctcccctgtctagacatgttgaggagtatctgcgtgtggtg
acatgctcccatgttctccagggttatggactcacggagacctgtgctgggtcctttgtt
tccctaccgaacaacatgtccatgctgggaaccgtcggccctccggtcccgtacgtcgaa
gtacgcctggaatctgtccctgagatggggtatgacgcgttgtccagcgagacgcctcgt
ggggagatttgtataagaggggacaccctgttctcagggtactacaagcgagaggaccta
accaaggaagtcatggtcgatggttggttccacacaggagacattggtgagtggcagcct
gatgggagcatgaagatcatcgaccgcaagaagaatatcttcaagctctcgcagggagag
tatgttgcggtcgagaatctggagaacatctttggccagactcccggtgttgattcggtt
tgggtgtatggcaacagcttcgaatcaagccttgttgcggtggtgaaccccaataagcag
gctctggagcgatgggcagagtcgaacggggtaactggagagtttgctacgatttgtgaa
gacccgaaagccaaagagttcatcttgggagaactaaccaagatgggtaaagaaaagaag
ctcaaaggcttcgagctcatccgggccgttcatctggacccggtgccgttcgacatggat
cgcgacctcattaccccgacgtacaagaagaagcggccgcagctgctgaaatactaccag
agcgtcattgatggcatgtatcagagcatgaagtag
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