Panicum virgatum (switchgrass): 120675295
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Entry
120675295 CDS
T07260
Name
(RefSeq) ABC transporter B family member 4-like
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120675295
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120675295
04147 Exosome [BR:
pvir04147
]
120675295
04090 CD molecules [BR:
pvir04090
]
120675295
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120675295
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120675295
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120675295
CD molecules [BR:
pvir04090
]
Proteins
120675295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
ABC_ATPase
AAA_29
SMC_N
AAA_22
AAA_16
RsgA_GTPase
AAA_21
DUF87
AAA_23
Zeta_toxin
AAA_30
AAA_24
AAA_15
DLIC
AAA_7
AAA_25
Motif
Other DBs
NCBI-GeneID:
120675295
NCBI-ProteinID:
XP_039812368
LinkDB
All DBs
Position
5N:complement(52618258..52632838)
Genome browser
AA seq
1266 aa
AA seq
DB search
MDATASGGGDQNGIGRDGGEKKDASAAAAAKKVSLLGMFRYADRLDVLLMVVGAVGAVAN
GVAEPLMTVIFGNVIDSFGDSTAPSVIRSVSKVVLKFIYLGIGAAVASFLQVSCWTMAGE
RQSARIRSLYLDAVLRQDIAFFDTELTTGQAVSRMSSDTLVIQDALGEKAGKLLQLASAF
FGGFVIAFTRGWLLTLVMLTSLPLIAIAGAVSAQFLTKVSSKKLTSYGDAGDTVEQTIGA
IRTVVSFNGEKKAIAMYKKLIKKAYKTDILEGLINGFGMGSVFCIFFASYGLGFWYGGKL
IVDKGYTGGKIITVLFAVIAGAASLGNATPSLSAIAKGQSAAYRLFETIERKPKIDSGDT
SGMVLEDIKGDVELKDVHFRYPSRPDQLILDGLSLQVASGTTMAIVGESGSGKSTVISLV
ERLYDPQAGEVLIDGINIKNIRLSWIREKIGLVSQEPVLFMTSIKDNIMYGKEDATLEEI
KRAAELANAANFIDKLPNGYETLVGQRGAQLSGGQKQRIAIARAILKDPKILLLDEATSA
LDVESERIVQEALNRIMVERTTLVAHRLSTVRNVDCITVVHQGKIVEQGPHDALVKDPNG
AYSQLIRLQESRVDERHKQAGSGVPDSRSKSTSLSFRQSMNKNSFGNNNRYSFKNPLGLS
AELHEDRIMGAQKTEELSDVVAHKKASIGRLFKLNIPEVPVLLLGSIAAAVHGVIFPLFG
IIISGAIKSFYEPPDKLKKDTSFWALICVVMGVACLISIPAEYSLFAFAGGKLIERIRTL
SFQSIVHQEVGWFDNALNSSGALGTKLSVDALNVQRLAGDNLSLIVQFIASLTTGFVIAF
AADWRLALVITCVIPLVGAQGYAQVKFLKGFNEDAKEMYENASQIATDAVGNIRTVASFS
AEKRVVATYNENCEALRKQGIRSGVVGGLGYGFTFLILHLTYGLCFYVGAQFVRQGKTTF
PDVFKVFFALVLASLGVSQASALASDATKARDSAISIFSILDRKSKIDSSINDGMTLDNV
TGNINFNNVSFKYPQRPDVQIFSDFTLHIPSGKTVALVGESGSGKSTIIALLERFYDPDS
GGISLDGVEIKSLKVRWLRDQMGLVGQEPVLFNDTIRANITYGKHGEVTEEEVMAVAKAA
NAHEFVSGLPQGYDTLVGEKGIQLSGGQKQRIAIARAIIKDPKILLLDEATSALDAESER
IVQDALDRVMVSRTTIVVAHRLSTIKGADMIAVLKEGKIVEKGRHEALMRIKDGAYASLV
ELRSES
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgacggctagcggcggcggcgatcagaacgggattggcagagacggcggggag
aagaaggatgcctcggcggcggcggcggccaagaaggtgtcgctgctcggcatgttccgg
tacgctgaccgcctggacgtgctgctgatggtggtcggcgcggtgggggcggtggccaat
ggcgtggcggagcccctcatgaccgtcatcttcggcaacgtcatcgactccttcggcgac
agcaccgcgccgagcgtcatccgcagcgtcagcaaggttgttctcaagttcatatatttg
ggcatcggagcagctgttgcctccttccttcaggtgtcgtgctggacgatggctggagaa
aggcagtcagcccgcatccgttctctgtacctcgacgctgtcctgaggcaagatattgca
ttcttcgatacagagttgacaacaggccaagcagtttccaggatgtccagcgataccctc
gtgattcaggacgcgcttggcgagaaggcaggaaagcttctgcaactcgcatctgccttt
tttggtggttttgtaatcgcatttacaagaggctggctcctcactcttgtcatgctaaca
tcactaccgctaattgctattgccggtgcagtttctgcgcagtttctaaccaaggtttct
agcaagaaactgacatcttatggggatgctggggacacagttgagcagaccatcggagct
atacgaacggtagtttcgttcaatggtgagaaaaaagctattgcaatgtacaaaaaattg
atcaagaaggcatacaagactgatattttggaaggcctcatcaatggttttggcatggga
tctgtcttctgcattttcttcgccagctatgggctaggtttctggtatggtgggaagcta
atcgttgacaaaggctacactggagggaaaattatcacagttttgtttgctgtgatagct
ggcgctgcttctttaggtaatgcaacaccttctttatctgcaattgccaagggtcagtct
gcagcatacagattgtttgaaaccatagaaaggaaaccaaagatagattcaggtgatacc
agtggcatggtcttagaagatatcaagggtgatgtcgagctaaaagacgttcactttcgc
tacccttcaagacctgatcagttgatattagatggattgtcattacaagtagccagtggg
acaacaatggccatagttggagagagtggaagtggcaagtcaactgttatcagcctagtt
gaacgactctatgatccacaggctggtgaagttctgatagacggcattaacatcaagaac
attaggctcagttggataagagagaagattggtctggtcagccaagaaccggtgctcttt
atgacctccattaaagataacatcatgtacggtaaagaagatgcgacacttgaagagatc
aagagagcagctgagcttgcaaatgcagcaaacttcatcgacaagttgccgaatggctat
gagacattggttgggcagcgtggcgcacaactttctggaggacagaagcaaagaattgca
atagcaagagccatccttaaagatccaaaaatacttttgcttgatgaagcaacaagtgca
ttggatgtggaatctgagcggatagttcaggaggcactgaataggataatggtggaaagg
accacacttgttgctcatcgtttaagcactgtaaggaatgttgactgcataacagttgtc
catcaaggaaaaatagttgaacaaggtcctcatgatgcattggttaaggatcctaatggg
gcctactcccagcttattaggctacaagagagtcgtgtcgatgaaaggcataaacaagca
ggctctggggtaccagattccagatcaaaaagcaccagtttgtcatttagacagtcaatg
aataaaaattcttttggtaataacaacagatattccttcaagaaccccttaggattgtca
gctgaactacatgaagataggatcatgggtgcacagaaaacagaagagctctctgatgtt
gtggcacataagaaagcatcaataggacgtcttttcaagctgaacataccagaagttcca
gttcttctgttaggttctatagcagcagcagtacatggagtcattttcccattgtttggt
ataataatatctggtgctataaaatcgttctatgaaccaccagataagctgaaaaaggat
accagcttttgggctctgatatgtgttgttatgggggttgcatgtttgatttcaatccca
gcagaatattctttgtttgcgtttgctggtggcaaacttatagaacgtatacgtactttg
tcatttcaaagcattgtgcaccaagaagttggttggtttgacaatgccttgaattccagt
ggggcacttggaacaaagctctcagttgacgccttaaatgttcagcgcttagcaggagat
aatttgtcccttatagtgcagttcatagcttcattaacaactggatttgtcatagccttt
gctgcagactggaggcttgccctggtcatcacatgtgttattcctttggtaggcgcgcaa
ggttatgctcaagtaaagttcttgaaggggtttaatgaagatgctaaggagatgtatgaa
aatgcaagtcaaattgcaactgatgctgttggtaatatcagaacagtagcatctttctct
gctgagaaaagagtggttgcaacatacaacgagaactgtgaagctctaaggaaacagggc
attcgaagtggagttgttggagggcttggttatggcttcacattcttaattttgcatctc
acatatggtctttgtttctatgttggtgcacagtttgtacgtcagggaaaaactactttt
ccagatgttttcaaggttttcttcgccttagttttggcatctcttggggtttcacaggct
agtgcactggcttctgatgcaacaaaggcaagggattctgctatatccattttcagtatt
ctggataggaagtcaaaaatcgactcaagtatcaatgatgggatgacactggataatgtc
actggaaacattaatttcaacaatgtcagtttcaagtacccgcaacgccctgatgtccag
atattcagtgactttaccttgcacattccttctggaaagacagtagcacttgttggagag
agtggtagcggcaagtccaccataattgcgttactggagcgtttctatgatcctgattct
ggtggaatctcactagatggtgttgaaattaaaagcctaaaagttaggtggctaagggat
caaatggggctggtaggccaggagccggtgcttttcaatgacacaatccgtgccaacata
acatacgggaaacacggtgaggtaacagaggaagaggttatggctgtggccaaggcagcc
aatgcccatgagttcgtatcaggcttgccacaaggatacgacaccctggtgggagagaaa
ggaattcagctatctggtgggcaaaaacaacggatagctattgcaagggccataatcaag
gatcctaagatattactacttgatgaagcaaccagcgccctggatgctgaatctgagcgc
atcgttcaggatgcattggaccgagtcatggtcagccgaacgactattgtggtggcacac
cgcctctccacgatcaaaggggctgatatgattgcggtcctaaaggaagggaagattgta
gagaagggaaggcacgaagccctgatgcgcatcaaggatggagcctacgcttcattagta
gagctccgttctgaatcttaa
DBGET
integrated database retrieval system
