Panicum virgatum (switchgrass): 120675337
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Entry
120675337 CDS
T07260
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
pvir03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120675337
03083 Polycomb repressive complex
120675337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120675337
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
120675337
Histone modification proteins
HAT complexes
HATB complex
120675337
HDAC complexes
Sin3A-HDAC complex
120675337
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
120675337
PRC2.2
120675337
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
120675337
Heterochromatin formation proteins
Other heterochromatin formation proteins
120675337
Chromatin remodeling factors
NuRD complex
120675337
NuRF complex
120675337
NuRF complex (fruit fly)
120675337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML
WDR55
EIF3I
Beta-prop_IFT122_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
eIF2A
Beta-prop_DCAF12
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
120675337
NCBI-ProteinID:
XP_039812460
LinkDB
All DBs
Position
5N:53635125..53644910
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AA seq
453 aa
AA seq
DB search
MKERSGSRAAVDERYAQWKSLIPVLYDWFANHNLVWPSLSCRWGPQFEKATYKNRQRLYL
SEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIVHPGEVNRIREL
PQNSKIIATHTDSPDVLIWDVEAQPNRHAVLGATESRPDLILTGHQENAEFALAMCPAEP
YVLSGGKDKSVVLWSIQDHISALGDSSSSPGASGSKQSGKTANEKESPKVDPRGIFHGHD
STVEDVQFCPSSAQEFCSVGDDACLILWDARTGTSPAVKVEKAHSGDVHCVDWNPLDVNY
ILTGSADNSVRMWDRRNLGSGGAGSPIHKFEGHKAAVLCVQWSPDRASVFGSSAEDGFLN
VWDHEKVGKKKNSNVPAGLFFQHAGHRDKIVDFHWNSSDPWTIVSVSDDGESTGGGGTLQ
IWRMSDLIYRPEEEVLQELENFKAHLASCTPRN
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagaggagcggctcgagggcggcggtggatgagcgctacgcgcagtggaagtcg
ctcatcccggtgctctacgactggttcgccaaccacaacctcgtctggccgtcgctctcc
tgccggtggggcccgcaatttgagaaagctacctacaagaatcgccagcgcctttaccta
tctgagcagacggatgggagtgtgcctaatactctggttattgcaaactgtgaagttgtc
aaaccaagggttgcagctgctgaacatatctcacagttcaatgaggaagcacgatcgcct
tttgtgaagaagtataagactatagttcatcctggtgaggttaacagaatcagggagctt
ccacagaacagtaagatcatagccactcacaccgacagtccagatgtacttatttgggat
gttgaagcccaaccaaatagacatgctgtcctaggagcaactgaatctcgccctgatctg
atattaacaggacatcaggaaaatgctgaattcgcgcttgccatgtgtccagcagaacca
tatgtactatcaggaggaaaggacaaatctgttgtcttgtggagcatccaagaccacata
tctgctcttggggattcctcatcttctcctggagcatctggcagcaagcagtctggcaaa
actgcgaatgaaaaggagagtcccaaagttgatcctcggggtatattccatggacatgac
agcactgttgaagatgttcagttctgcccttccagtgcacaggaattctgtagtgtgggt
gatgatgcttgtcttattctctgggatgcccggactggtactagccctgctgttaaggtt
gagaaagctcacagtggggatgttcattgtgtggattggaatccgcttgatgttaactat
atcttaactggttctgctgataactctgtccgtatgtgggatcgtcgcaatctgggttct
ggaggagctggttctccgattcacaaatttgagggccataaagctgctgttctttgtgtc
cagtggtcacctgacagagcatctgttttcggaagttctgcggaagatggtttcttaaat
gtgtgggatcatgagaaggttgggaagaaaaaaaattctaatgtaccagctgggcttttc
tttcaacatgctggtcacagggataagattgtagacttccactggaattcgtcggatcct
tggacaatcgtcagtgtctcagatgatggtgagagcaccggtggaggtggaacactgcag
atatggcgcatgagtgatttgatctaccgcccagaggaggaagttctccaagaactggag
aatttcaaggctcacttggccagctgcactccgaggaactga
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