Panicum virgatum (switchgrass): 120675461
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Entry
120675461 CDS
T07260
Name
(RefSeq) alpha-amylase 3, chloroplastic-like
KO
K01176
alpha-amylase [EC:
3.2.1.1
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00500
Starch and sucrose metabolism
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
120675461
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.1 alpha-amylase
120675461
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Gene cluster
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Motif
Pfam:
Ig_N_CWD1
Alpha-amyl_C2
Alpha-amylase
Glyco_hydro_70
Motif
Other DBs
NCBI-GeneID:
120675461
NCBI-ProteinID:
XP_039812597
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Position
5N:complement(54078959..54090170)
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AA seq
881 aa
AA seq
DB search
MSVGSGCITAIPGVAPQPRAGLLGGVFLQVAAARPRAGRCRATQHGRVRLGGCVVARAGA
AETPVAGAGEDAGAVLSEKFPLRRCQTVEGKAWVRVDAEPDGDGKCKVVVGCDVAGKWIL
HWGVSYDGEHGSKWDQPPSEMRPAGSVPVKDYAIETPLETLPNSEGRYEVQIKFDKDTPI
AAINFVLKEEETGAWFQHKGRDFRIPLSGSFDGGVPFGANQDIGVWPGDLGHLKKHEGSN
AQPQETIPGGTGLSGKHISGFYQEFQIIKSEYTQNFVTVTVKRDNKTHKRLVEFDTDIPG
EVILHWGVCRDNNMTWEIPPEPHPPTTKIFRQKALQTLLQAKADGRGNSLSFLLDAEYSG
LFFVLKLDEYTWLRNLDNGSDFFISLTRMEERGSIQDLGKVEPQKFDKPSQTDGIISDIR
NLVVGLSSRRGQRAKNKVLQEDILQEIERLAAEAYSIFRSPTIDSVEASVDLDDPSIAKP
ACSGTGSGFEILCQGFNWESHKSGKWYVELGKKAKELSSLGFTIVWSPPPTDSVSPEGYM
PRDLYNLNSRYGTMDELKELVKIFHEADIKVLGDAVLNHRCAQFQNNNGVWNIFGGRMNW
DDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRNDLKEWLCWMRKEVGYDGWRLD
FVRGFWGGYVKDYLEASEPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATKGTAG
AFDVTTKGILHAALERSEYWRLSDEKGKPPGVLGWWPSRVVTFIENHDTGSTQGHWRFPY
GMELQGYAYILTHPGTPAVFYDHIFSHLQPEIAKFINIRQRQKIHCRSKIKILKAERSLY
AAEIDEKLIMKIGSEHFEPSGPQNWIVAAEGQEYKIWEVSS
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtggggagcgggtgcattacggcgatcccgggcgtggccccgcagccgagggcc
gggctgctcgggggcgtcttcctgcaggtggccgcggcgcggccgcgggccgggcggtgc
cgcgccacgcagcacgggcgcgtgaggctcggcggctgcgtcgtggctcgagctggcgcg
gccgagactccggtggctggcgccggcgaggacgccggagccgtgttgtccgagaagttc
cccctgcgccgatgccaaacggtggaagggaaggcgtgggtgagggtggacgcggagcca
gatggggacggcaagtgcaaggtcgtggtcggatgcgatgtggcggggaagtggatactg
cactggggcgtctcttacgacggtgagcatgggagcaaatgggatcagcctccttcagaa
atgcgaccagctggttctgttccagtcaaggactatgcaattgaaacaccattggagact
ttacccaattcggagggccggtatgaagtgcaaatcaaatttgataaggacactccaatt
gcagccatcaattttgtcctcaaggaagaggaaacaggtgcatggtttcagcataagggc
agggatttcagaatacccttgagtggatccttcgacggtggagttccatttggagcgaac
caagatattggtgtatggccaggagatttggggcatttgaagaaacatgaaggatctaat
gctcagccacaagaaactatacctgggggtacaggtttaagtggaaaacatatttcaggg
ttctaccaggaattccaaattataaaatcagagtacactcagaactttgtaactgttact
gtgaagagggataataaaacacataaaaggcttgtggaatttgacactgatattcctgga
gaagttatccttcattggggagtttgcagagataataacatgacatgggagatcccgcca
gaaccacatccaccgacaacgaaaatcttccgacagaaagctcttcagaccttgctacag
gcaaaagctgatggaagaggcaattctctatcattcttactagatgcagagtattctggt
ctgttttttgtgctcaaacttgatgagtatacttggttgagaaatctggacaatggatcc
gatttcttcatttctcttacaagaatggaagaacgtggaagcatccaagatcttggtaag
gttgagccacaaaaatttgataagccttcacaaactgatggtataatcagtgatataaga
aatctggtggttggcctatcgtctagaagaggtcagagagctaagaataaagttctgcaa
gaggatatcctgcaagaaattgaaaggctagcagcagaagcttatagcatttttaggagc
cctactattgattccgttgaggcatctgtagatctcgatgatccatcaatcgcaaagcca
gcttgttctggcactggatctggcttcgaaatattgtgccaaggatttaattgggaatct
cataagtcagggaaatggtatgttgaacttggtaaaaaggccaaggagttgtcatccctt
ggctttaccattgtttggtcaccaccacctactgattctgtgtcacctgaaggatacatg
ccaagggatttatataatctgaactccagatatgggaccatggatgagttgaaggagctt
gtgaagattttccatgaagctgacatcaaggttcttggtgatgctgttctaaatcacagg
tgtgctcagtttcagaataacaatggtgtctggaatatttttggtggccgtatgaactgg
gatgatcgagcggttgtagcagatgatccacatttccagggaagaggaaacaagagtagt
ggagataacttccatgcagcaccaaacattgatcactcccaggagtttgtgaggaatgat
cttaaagaatggctttgctggatgagaaaggaagtaggatatgatggatggagacttgac
tttgttcgtggtttttggggtggatatgtcaaagattatttggaagcaagtgagccatac
tttgcagtaggagagtactgggactccctcagttacacttatggggaaatggactacaat
caagatgcccacaggcagagaattgttgattggataaatgctacaaagggaactgccggt
gcatttgatgtcactaccaaaggaatacttcatgcggcgcttgaaagatctgagtattgg
cgcttgtctgatgaaaaaggaaaaccccctggagtattgggttggtggccttcccgagtt
gtcacattcatagagaatcatgatactggctctactcagggtcattggagattcccctat
ggtatggagttgcaaggatatgcctacatcctgacgcaccctggcactccagcagtcttc
tatgatcacattttttcacacttacaaccagagatcgccaaatttatcaacatccgacaa
cgtcaaaagattcattgccgcagcaagatcaagatactcaaggcagaaaggagtttatat
gctgctgaaatcgatgagaagttaataatgaaaataggctcagaacattttgagccaagc
ggtccccagaactggattgttgctgccgagggtcaagaatacaaaatctgggaagtgtct
tcatag
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