Panicum virgatum (switchgrass): 120675524
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Entry
120675524 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase SINA-like 10
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120675524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120675524
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120675524
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120675524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_ZnF
Sina_RING
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
120675524
NCBI-ProteinID:
XP_039812659
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Position
5N:10856929..10858405
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AA seq
283 aa
AA seq
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MNKKSAKRTRVPPAPASWSSPSKNPSTGRKGDDDEEVVEKNIWMDPDAQSVDCGICFMPY
ESEVFMCSNGHAACGKCCLRINRKCWCCDQSIGDIRCRPVENILAEMNTVCKFSKYGCAE
VVKYVEKRRHEETCPRAPYGCPIDACSYVGLDLHAHLLDDHDDTVNFLRATRVTLRKGDP
FRVLVQKRNPDATGLGSVFLLLNGGGVLAGRSLSLVCLGPRPEGNGEISYKMEVRGCQPG
ELSLAATAPCIRELEGFEAKKFLFVPDADWGPFGSVAVSIRIG
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagagcgccaagaggaccagggtgccgccggcgcccgcgtcgtggtcttcg
ccaagcaaaaatccttcaacggggaggaaaggcgatgacgacgaagaggtggtggagaag
aacatctggatggacccggatgctcaatccgtcgactgcggcatttgttttatgccgtat
gagtctgaggtttttatgtgtagcaatggtcatgccgcctgcggtaagtgttgtctccgt
attaatcgaaaatgttggtgctgcgaccaatcgattggcgacatccgctgccgcccggtg
gagaacatactcgccgagatgaacacggtctgcaagttcagcaagtacggctgcgcggag
gtcgtcaagtacgtcgagaagcggcggcacgaggagacctgccctcgcgcgccgtacggc
tgccccatcgacgcctgcagctacgtcggcctggacctgcacgcccacctcctggacgac
cacgacgacacagtcaatttcctccgggccacgagggtgacgctccgcaagggcgacccg
ttccgcgttctggtgcagaagcgcaaccccgacgccaccggcctggggagcgtgttcctg
ctcctcaatggcggcggcgtcctggcgggccgctccctctccctggtctgcctcgggccg
cgccccgaggggaacggggagataagctacaagatggaggtgcgcggctgccagccgggc
gagctctcgctggcggcgacggcgccgtgcatccgcgagctggaggggttcgaggccaag
aagttcctcttcgtgccagacgccgactgggggccgttcggcagcgtcgccgtcagcatc
cgcatcggttga
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