Panicum virgatum (switchgrass): 120675553
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Entry
120675553 CDS
T07260
Name
(RefSeq) ABC transporter G family member 38-like
KO
K08711
ATP-binding cassette, subfamily G (WHITE), member 2, PDR
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120675553
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120675553
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCG (White) subfamily
ABCG2, 3 subgroups
120675553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC2_membrane
ABC_tran
PDR_assoc
ABC2_membrane_7
ABC_trans_N
AAA_21
ABC2_membrane_3
AAA_29
SMC_N
AAA_16
AAA_28
AAA
AAA_18
AAA_25
PDR_CDR
Motif
Other DBs
NCBI-GeneID:
120675553
NCBI-ProteinID:
XP_039812685
LinkDB
All DBs
Position
5N:54956073..54964854
Genome browser
AA seq
1466 aa
AA seq
DB search
MEMLSRGLHGMASPDATPYFSGASSRRRSGADEVDDEEALQWAAMERLPSFERLRTGLAR
AAAAGARGHEEVDVRAMGLAQRQAFVDRVFRVAEEDNERFLKKLRARIDRAGIQIPTAEV
RFRGLSVEAECHVGTRALPTLANAALDTAESLLGRLGVNLGGKRRPLRILKDVSGVVRPS
RMTLLLGPPSSGKTTLLLALAGKLDPSLEVSGEVTYNGYGLDEFVPQKTAAYISQNDVHD
GEMTVKEVLDFSARCQGVGQRYELLQELAKKERQQGIYPDPEVDLFMKATSVHGATLQTD
YILRILGLDMCADVIVGNEMMRGISGGQKKRLTTAEMLVGPTKVLFMDEISTGLDSSTTF
QIVKCIQQIVHLGEATVLVSLLQPAPEVFELFDDVMLLSEGQIVYQGPREYVLEFFESCG
FRCPQRKGVADFLQEVTSKKDQEQYWIQNEKPYHYVSVPDFVSKFKKFHMGKSLKKQLSV
PFHKRKIHKSALVFSEQSVPTLELLKTSWSKEWLLMKRNSFIYVFKTVQGTLIALVASTV
FLRTQMHTRNEEDGQVYIGALVYVMIVNMFNGFAESAVILARLPVLFRHRDFLFYRPWAF
TLPNILLRVPASLFESIVWVAITYYTIGFAPEASRFFKHLIAIFFIQQMAAGLFRLVSGM
CRTVVITNTAGSLAVLFMFVLGGFILPKDAISKWLIWGYYCSPLTYAYIALAANEMHSPR
WMDKFAPDGRRLGVAVLENAGIFTNKEWYWIATGALLGFSILFNVLFTLSLMYLNPVGKP
QAILPEETDTSIENTQEGKEMSDITQRSKVPTPEPLSPNSIITLDKVLEQLRGQSQSTSD
RSHRNASVRISPGRGMILPFEPLSMSFSEINYYVDMPAEMKSQGVTADKLQLLSGISGAF
RPGVLTALMGVSGSGKTTLMDVLSGRKTGGYIEGEIYISGYPKNQATFARISGYCEQNDI
HSPQITIRESLLFSAFLRLPNEVTNQEKKIFVDEVMELVELNGLKDAIVGLPGVNGLSTE
QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDI
FEAFDELLLMKRGGQIIFSGPLGRNSHKVVEYFEAIHGVPKIKEGCNPATWMLDVSSAAT
EVQLKIDFAEHYKSSTLYQRNKALVKELSKPLPGSSDLYFPTQYSRSTFDQFKCCLWKQW
LTYWRSPDYNLVRMFFALFTALLLGIIFWRVGRKIKSSTDLLIIIGSMYFAVAFVGFENC
VTAQPVIAVERTVFYRERAAGMYSAIPYALSQVVVEIPYVFVETVIYSLIVYSMMSFQWT
PAKFFWFFYISFLTFLYFTYYGMMSVAITPNPQLASIFAAAFYSLFNLFSGFIIPRTKIP
KWWIWYYWICPVAWTVYGLIVSQYGDVEDFIKVPGQPDKQVRTFIKDYFGYDPDFMGVVA
GVLTGFTVLFAFTYVYCIKRFNFLQR
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atggagatgctgagccgaggcctgcacggcatggcgagcccggacgccacgccctacttc
tcgggcgcgtcgtcgcgacggcgcagcggcgccgacgaggtggacgacgaggaggcgctg
cagtgggccgccatggagcgcctcccgtcattcgagcgcctgcgcacgggcctcgcgcgg
gcggcggcggcgggggcccgcgggcacgaggaggtggacgtgcgcgccatggggctcgcg
cagcgccaggcgttcgtggaccgcgtcttccgcgtcgccgaggaggacaacgagcgcttc
ctcaagaagctccgcgcccgcatcgaccgcgcggggatccagatccccacggccgaggtg
cggttccggggcctcagcgtggaggccgagtgccacgtcgggacgcgcgcgctgccgacg
ctggcgaacgcggcgctggacacggccgagtcgctgctgggacggctcggggtcaacctc
ggcggcaagcggaggccgctccgcatcctcaaggacgtctccggcgtcgtgcgcccgtcc
aggatgacgctcctgctcggcccgccgtcgtccggcaagacgacgctcctgctggcactc
gccggcaaactggaccccagcctcgaggtgagcggggaggtgacgtacaacgggtacggg
ctggacgagttcgtgccgcagaagacggcggcgtacatcagccagaacgacgtccacgac
ggcgagatgaccgtcaaggaggtcctcgacttctccgcgaggtgccagggcgtgggccag
agatacgagctgctccaggagctggcgaagaaggagaggcagcaggggatctatcccgac
ccggaggtcgacctgttcatgaaggccacttcagttcatggagccactctgcagacggac
tacattctcaggatcctcgggctggacatgtgcgcggacgtcatcgtcggcaacgagatg
atgcgcggcatctccggcggccagaagaagcgcctcaccacagcggagatgctggtcggc
ccgaccaaggtgctgttcatggacgagatctccacgggcctcgacagctccaccaccttc
cagatcgtcaagtgcattcagcagatcgtccacctgggcgaggccaccgtcctggtgtcg
ctgctccagccggcgccggaggtcttcgagctcttcgacgacgtcatgctgctgtccgag
ggtcagatcgtctaccaggggccccgggagtacgtgctcgagttcttcgagagctgtggg
ttccgctgcccgcagaggaaaggtgtcgctgatttcttgcaggaggttacatcaaagaaa
gatcaagagcagtactggatacagaacgaaaaaccatatcactatgtgtcagtacctgac
tttgtttccaagttcaagaagtttcatatggggaagagcctcaaaaagcaactttcagtt
cctttccacaagagaaagatacacaaatctgctttggtattctctgagcagtctgttcct
actctggagcttctcaaaacctcatggtccaaggaatggcttctcatgaagagaaactcg
tttatctatgtttttaaaaccgttcagggaaccctgattgcattagtagcatctacggta
ttcttgcgaacacaaatgcatacaagaaatgaggaagatggacaagtctacataggagca
cttgtttatgtcatgatagttaacatgttcaatggttttgctgagtcagctgttattttg
gcacggctccctgttcttttcagacatagggacttcttgttctatcgaccatgggctttt
acacttccaaatattctactgagagtccctgcctccctgttcgaatcgatagtctgggta
gctataacatattacaccatcggttttgcccctgaagctagccggttcttcaaacatctg
attgccatcttctttatccagcagatggctgcaggactcttcaggcttgtctctggcatg
tgcagaacggttgtcataactaatacagcaggatcacttgcagtccttttcatgtttgta
ctgggaggattcatcctaccaaaagatgcaatttcaaaatggctgatatggggttattat
tgttcacctctaacatatgcatacattgctcttgcggctaatgagatgcattctccaagg
tggatggacaaatttgcacctgatggtaggagattgggagtggcagttctagaaaacgca
ggtatcttcaccaacaaggaatggtactggattgcaactggtgcacttctagggttcagt
attctgttcaatgtgttattcacactgtcacttatgtacctaaatcctgtcggaaaacca
caggcaatcttgcctgaagaaactgatacaagtatagagaacactcaggaaggaaaggag
atgtcagatataacacagagaagtaaagtcccaacaccagaacctttatccccaaactca
attatcacattggataaggtgctcgaacaattacgtggccaatcccagagtacttctgat
aggtcacacagaaatgcttctgtaagaatttctccagggagagggatgattcttcctttc
gaacccctctccatgtccttcagtgagataaattactacgttgacatgcctgcagagatg
aagagccaaggagtaactgctgataagcttcagctgttgtcagggatatctggggctttt
cgacctggtgttcttactgcccttatgggtgtgagtggatctggaaagactactctcatg
gatgtgttatctggaaggaagactggtggatatattgaaggagaaatatatatatctggt
taccctaagaaccaagcaacatttgcaagaatatcagggtactgtgagcaaaatgacatc
cactctccgcagatcactataagggagtccttactcttttctgctttcctgcgtcttcct
aatgaggtcacgaatcaagaaaagaagatattcgtggatgaagttatggaactggttgag
cttaatggtctcaaggatgctattgtgggtctccctggtgtgaatgggctctcaacagaa
caaagaaagagattaacaattgctgtagagcttgtggcaaacccgtcaattatcttcatg
gacgagccaacttcaggtcttgatgcaagggctgctgcaattgttatgagaactgttcgg
aacactgttaatactggaagaaccgttgtgtgcactatccatcaaccaagtattgacatt
tttgaagctttcgatgagctgcttttaatgaaaagaggaggccagatcatattctctggg
ccattgggtaggaactcgcataaagttgttgaatactttgaggcaattcatggagtccct
aagatcaaagaagggtgcaaccctgctacatggatgttggatgtaagctcagctgctaca
gaggttcagttgaagattgattttgcggaacattacaagtcatcaactctgtatcagcgg
aacaaagcattagttaaagagctgagcaagccacttcctggttccagcgatctctacttc
cccactcaatactcgcggagcacctttgatcagttcaagtgttgcctctggaagcaatgg
ttgacttactggagaagcccagactacaaccttgtcagaatgttctttgcattatttact
gccttactgctggggattatattctggagggttggtcgtaagataaagagttcaacagat
cttttgatcatcattggatcaatgtattttgctgtcgcatttgttggttttgaaaattgt
gtaactgctcaaccggttattgctgtggagaggactgtcttttacagagagcgtgcagcc
ggaatgtactcagctataccctatgctctctcacaggttgttgtggagataccatatgtg
ttcgtcgagactgtcatatatagtcttattgtgtactcaatgatgtctttccagtggaca
ccagcaaaattcttctggttcttctacatttcattcctcaccttcctctatttcacttac
tatggtatgatgagtgtcgccataacaccgaaccctcagcttgcttccatatttgccgct
gccttctactctctctttaatctcttctcagggttcatcatcccaagaacgaaaatccca
aaatggtggatatggtactactggatttgtccggtggcatggacggtttatggactgatt
gtttctcagtatggtgatgtggaggattttatcaaggtgcctggccaacccgataagcaa
gtcaggactttcatcaaggactacttcggctatgacccagacttcatgggtgtagtagca
ggagtgctgactggctttactgtcctctttgcttttacatatgtttactgcataaagaga
tttaatttcctacagaggtag
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integrated database retrieval system
