Panicum virgatum (switchgrass): 120675611
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Entry
120675611 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120675611
09122 Translation
03013 Nucleocytoplasmic transport
120675611
03015 mRNA surveillance pathway
120675611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120675611
03041 Spliceosome [BR:
pvir03041
]
120675611
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120675611
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120675611
Spliceosome [BR:
pvir03041
]
Complex C
Other components
EJC/TREX
120675611
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120675611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
120675611
NCBI-ProteinID:
XP_039812747
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All DBs
Position
5N:complement(38789092..38805539)
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AA seq
428 aa
AA seq
DB search
MVEAKDNEVYEEDLVDYEEEVENVADGAPTNGSADVVKKGYVGIHSSGFRDFLLKPELLR
AIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALV
LCHTRELAYQICHEFERFSKYLPELRVAVFYGGVHIKNHKDLLKNECPHIVVGTPGRILA
LARDKDLPLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLGECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VVNYDMPESADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKALPDQI
DTSIYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggtggaggcgaaggacaacgaggtgtacgaggaggatctcgtcgactacgaggaggag
gtggagaatgtcgccgacggcgccccaaccaacggctccgccgatgtcgtcaagaagggg
tacgtggggatccacagctcggggttcagagacttcctgctcaaaccggagcttctccgt
gccatccaggactgcggatttgagcatccttccgaagtgcaacatgaatgcatccctcaa
gccattcttggaatggatgttatctgtcaagcaaaatctgggatgggtaagactgcggtt
ttcgtcctctcaactcttcagcagattgatcctgttgctggccaagtagctgcgcttgtg
ttgtgccacacaagagagttagcttaccagatttgccatgaatttgagagatttagcaaa
tacctgcctgaattaagagtcgctgtcttctatggtggtgttcacataaaaaatcataag
gatctgttgaagaatgaatgcccccatattgtggttggcacgcctggaaggatacttgct
ctagctagagataaggaccttcccttgaagaacgtgcggcatttcattctcgacgaatgt
gataagatgcttgaatcacttgacatgcgtagagatgtccaggagatcttcaaaatgact
ccccatgataagcaagtgatgatgttttcagcaaccctcagcaaggaaattcgcccagtt
tgcaagaaattcatgcaagatcctatggaaatttatgttgatgatgaggctaaactgacc
cttcatggtctagttcagcactacatcaaattgagtgaggcagagaagaatcggaagttg
aatgatctcttagatgcgctcgacttcaaccaagtcgtgatatttgtcaaaagtgttagt
agagctgcagagctgaacaagttgctcggtgaatgcaatttcccctcaatctgcatacat
tctggaatgacgcaggaagagaggttgacccgatacaagaacttcaaggaaggacacaag
aggattcttgtggctactgatttggtcggtaggggaattgatattgagcgtgtcaacatt
gttgtgaactatgatatgccagaatctgctgatacctacttgcatagggttggtcgggct
ggacgttttggcaccaagggacttgcaataacatttgtttcttctgcatccgattctgat
gttctcaatcaggtgcaagaaaggtttgaggttgacataaaggcgctgcctgatcagatt
gacacttcaatatacatgccatcttga
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