Panicum virgatum (switchgrass): 120675921
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Entry
120675921 CDS
T07260
Name
(RefSeq) DNA polymerase alpha catalytic subunit-like
KO
K02320
DNA polymerase alpha subunit A [EC:
2.7.7.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120675921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120675921
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
120675921
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase alpha / primase complex
120675921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
zf-DNA_Pol
DNA_pol_B_exo1
DNA_pol_alpha_N
DUF1744
DNA_pol_B_exo2
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
120675921
NCBI-ProteinID:
XP_039813062
LinkDB
All DBs
Position
5N:complement(65035994..65062214)
Genome browser
AA seq
1607 aa
AA seq
DB search
MNPRKNPRPLKPCAPNARTPSRQSHHLHFNKEEEEKNIHPLAFAVDLRDSAVHIEFVRAP
ERESEREREREAMEDASGDAGGSGRRTRTRGAEAVARSAALERLRAIRDGSARAAAAVQV
KVDAPIYDTVAEEDYAALVARRRKEAGEFIIDDDGLGYAEDGREEDWTHRALPSSSDEGS
DGEDGARRKRKQPRPPQAKRPPQQSAAAASLSAAAAMMGKQRISSMFTSSVFKKPGSDRA
NGSALAIDSIVDEVLAEFAPDENDREERRRRIGRVCAPQAPPPMIARINSEKVVVDAETV
VGSDSGFETDGVSDHGNDMVVELKPDAEMDTKLEETHGSSAELVVRDESSELKQDANGEV
KVEKVHRLNAKIKAEQNRNGGMTSATAGWMKVCGDGENAGGEGGVAVEGNANVDESSEFE
LKDGALPFYILDAYEEPFGANSGTVYLFGKVEVGKWFHSCCVIVKNIQRCIYAIPNHSVF
PRESISGLEKSTNSDFLPSLRATLHELASGLKSEIADKLSDLNVSNFVMTPVKRNYAFER
TDLPNGEQYVLKINYPYKDPALPADLRGEHFHALLGTNNNALELFLIKRKIKGPSWLSVS
KFVTRPSTQRVSWCKFEVAVDCPKDISVLTTSTSLEVPPVVVAAVNLKTIINEKHNVHEI
VSASVICCHRVKIDSPMRPEDWQKRGMLSHFTVMRKLEGSIFPIGLAKEASDRNQKAGCN
VLALESSERALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVSSSMWSKIGRL
RRSVMPRLTKGNTLYGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAETQLKK
DRREVSPHDIPPMFQSLGELLKLVEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGK
TLQGARAQRVEYLLLHSFHAKKFIVPDKFARNKEMNSTKRKMNADTEGANADDGTADPSV
GEEAHNGDQGKARKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVER
SSDGNVPSLPASKATGVLPELLRSLVERRRMVKSWLKTASGLKRQQFDIQQQALKLTANS
MYGCLGFSNSRFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDD
ISRAKTIAGMVIQEVNKKYCCLEIDLDGIYKRMLLLKKKKYAAIKVALDGSLRENIERKG
LDMVRRDWSLLSKEIGDFCLNQILSGGTCDDVVESIHSSLVQVQEQMRSGQIELEKYVIT
KSLTKAPQDYPDAKNQPHVQVALRVRQNGYSGCSAGDTVPYIICSQQDSENTHSVGIAQR
ARHPEELKRDPDKYMIDIDYYLSQQIHPVVSRLCASIQGTSPARLAECLGLDSSKFQSRS
TESSNQDTSTMLLSVIDDEDERYRGCEPLRLSCPSCSGTFDCPPVSSLITSASATNVSDS
DEAKDATANFWRRMRCPRCPDNVEDSRISPPVLANQMKRQADNFINMYYKGLLMCDDEGC
KYSTHSVNLRVMGDSEKGTICPNYPRCNGRLVRQYKEVDLYRQLSYFCYVLDATRCLDKL
DQKARLPFEKEFAAVGQTINLALMEIQKIRDRCAFGWVQLKDLAVSI
NT seq
4824 nt
NT seq
+upstream
nt +downstream
nt
atgaatccacggaaaaaccctagacccctgaaaccctgcgcgccaaatgctcgaacacct
tcccgccaaagccaccatctgcatttcaataaagaagaagaagaaaaaaatatccaccct
ttggcattcgcagtagatctccgtgactccgcggtccacatcgaatttgtgcgcgcgccg
gagagagagagcgagcgagagagagagagagaggccatggaggacgcatccggcgacgcc
ggcggctccggccgccgcacgcgcacccggggcgctgaggcggtggcacggtccgctgcg
ctcgagcgcctccgcgccatccgcgatggtagcgcccgagccgccgccgccgttcaggtg
aaggtcgacgccccgatctacgacactgttgccgaggaggactacgccgcgctcgtcgcc
cgccgccgcaaggaagccggcgagttcatcatcgacgacgacgggctcggctacgccgag
gatggtcgcgaggaggattggacccaccgcgccctcccctcctcctccgacgagggatcc
gacggcgaggatggcgctcgccgcaagcggaagcagccgcgccctccccaggccaagcgc
ccgccgcagcagtccgcggcggcggcgtctctctccgcagccgccgctatgatgggcaag
cagcgcatctcttctatgttcacctcctcagtgtttaagaagcccggcagcgaccgcgcc
aacggctccgctctcgccatcgacagcatcgtggacgaagtcctcgccgaattcgcgcct
gacgagaacgaccgcgaggagaggcggcggcggatcggtagggtttgtgccccgcaggct
cctcccccaatgattgcccgcatcaactcggaaaaggttgttgtagatgctgaaactgtg
gtaggatcggacagtggatttgaaactgatggggtttcggatcatggaaatgatatggtc
gtggaattgaagccggatgcggagatggacaccaaattggaagaaactcatggttctagt
gctgagttagtggtcagggatgagagctcagaactgaagcaggatgctaatggggaagtg
aaggtagagaaagtgcaccgcctcaatgcaaagattaaggcagagcagaacagaaatggt
ggtatgactagtgcaacagcagggtggatgaaggtatgtggggatggagagaatgcagga
ggcgaaggaggggtggctgttgaaggtaatgcaaatgtggatgaaagctcagagtttgag
ctgaaggatggagcactgccattctatatattggatgcatatgaggaaccatttggtgct
aattcaggcacagtgtatttgtttgggaaggttgaagttggcaagtggttccatagttgc
tgtgtcattgtaaaaaatattcagagatgcatctatgctattccgaaccattcagtgttc
ccaagggagtccatatcagggctagagaagtctacaaattctgattttctgccatctctt
agagcaactttacacgagttagcatccggattaaagagtgaaatagctgataaactgtca
gacctcaatgtgtcaaatttcgtaatgactccagtcaagaggaactatgcatttgagagg
actgatttaccaaatggagagcagtatgtcctgaaaatcaattacccatacaaggatccc
gccctaccagctgacctcagaggtgaacatttccatgcactgctggggacaaacaataat
gctcttgaattgtttctcatcaaaaggaagatcaaggggccttcgtggctgtcagtttcc
aaatttgtgacacggccatctactcagcgggtcagctggtgtaaatttgaagttgcagtt
gattgcccaaaggacatatctgttttgacgacaagtacatccctagaagttcctcctgtt
gtagttgctgcagtcaatctcaaaactatcataaatgagaaacacaatgtgcatgagatt
gtatcagcatctgtcatatgctgtcaccgggtgaagattgatagtccgatgcgtccggaa
gattggcagaaacgtggaatgctcagccattttactgttatgcgcaagcttgaaggtagc
atatttcctataggccttgctaaggaagcttctgataggaaccagaaggctggttgcaac
gtgctggcattagaaagcagtgaacgtgcgttattaaatcgcttgatgattgagcttagc
aaacttgattgcgacgtacttgtggggcacaacatttcaggattcgacctggatgtcctt
ctacaccgtgctcagacttgcaaggtttcaagtagcatgtggtccaagattggtcgtctc
aggcgatcagtaatgcccaggcttaccaaaggaaacacattatatggttctggggcaagt
ccaggaattatgtcctgtattgctggtcgtcttctctgtgatacctatttatgctctcgc
gaccttctgaaggaggtgagttattcattgacacaacttgcagaaacacaattgaaaaag
gacagaagagaggtttccccacatgatatacctccaatgttccagtctctgggagaactt
cttaaactggttgaatatggtgagactgatgcatggctttctttggagctcatgtttcac
ttgagtgttctaccgttgacacgtcaactgaccaacattagtggtaacctgtgggggaaa
acactccagggtgctagggctcagagggtagaatatctactattgcactcattccatgca
aaaaaatttattgtacctgataagtttgcacgcaacaaagagatgaactccacaaaacga
aaaatgaatgctgatactgagggtgcaaatgctgatgatggtactgctgatccttctgtt
ggtgaagaggcgcataatggtgatcaaggtaaagccagaaaaggaccttcgtatgctggt
ggcttggttttggagcctaagaagggtttatatgataagtatgttctacttctggacttc
aacagtctttacccttcgataattcaggaatacaacatctgctttaccactgttgagcgt
tcttctgatggcaatgttcctagcttaccagcttcaaaagctactggtgttttacctgag
ttgctgaggagtttggtggagaggagaagaatggttaaatcatggctgaagactgcttct
ggtcttaaaagacagcagtttgatattcaacagcaagcattgaagcttactgcaaatagc
atgtatggttgcttgggcttttccaattccaggttttatgcgaaaccacttgctgagctt
attacactgcaaggaagagagatcttgcagaacactgttgatctggttcagaataactta
aatttggaggttatttacggtgatacagactccattatgatacatactggacttgatgac
atctccagggcaaaaacaattgctggaatggtcattcaggaggtgaacaagaagtactgt
tgtctggagattgatcttgatggcatatacaaaagaatgttacttctcaaaaagaagaag
tatgctgctattaaagtggcactagatggcagcttacgagagaacattgaacgcaaagga
ctcgacatggtcagacgtgattggagtttgctgtcaaaagaaattggagatttttgccta
aatcaaattttgtctggagggacatgtgatgatgttgtcgagtcaattcatagttctctt
gtccaggtgcaagagcaaatgagaagtggtcaaatagagcttgaaaaatatgttataaca
aagagtttgacgaaagcaccacaagattatccagatgctaaaaatcagcctcatgtccag
gttgcattgagagtgaggcaaaatggttactctggttgctctgctggtgatacggttcct
tatataatttgctctcagcaggattcagaaaatacacattctgtgggaatagctcaaaga
gctaggcatcctgaggagttgaaaagagatcctgacaagtatatgattgacatcgactat
tatttgtcacaacagattcatcctgttgtttctcgtctctgtgcttccattcagggtact
agcccagcccgtcttgctgaatgtcttggacttgattcatctaagttccaatcaagatcg
actgagtctagcaatcaagatacatctaccatgctgctatcagtaatagatgatgaagat
gagagataccgtggttgtgagccactgcgtttatcatgtccaagctgttctggtaccttc
gactgcccccctgtatctagtctgattactagtgcaagtgctacaaatgtatcagattcg
gatgaagcaaaagatgctactgctaatttctggcgtcgaatgcggtgcccaagatgccca
gataatgttgaggactccagaatttcccctcctgtgcttgccaaccagatgaaaagacag
gccgataatttcatcaacatgtattataaaggtttgctgatgtgtgatgatgagggctgc
aaatactcgactcacagcgtaaatcttagagttatgggggattctgagaaaggaaccatc
tgccctaactacccacgctgcaatggtcgcttagtaagacagtacaaggaggtggatcta
tacaggcaactgtcctacttttgctatgtgcttgatgcaacccggtgccttgataagctg
gaccagaaggcaaggctccctttcgagaaagagtttgcagcggtaggccaaaccattaac
ttggcactgatggagattcagaaaatccgagatagatgcgcatttggatgggttcagctt
aaggatcttgctgtgtcaatctga
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integrated database retrieval system
