Panicum virgatum (switchgrass): 120675959
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Entry
120675959 CDS
T07260
Name
(RefSeq) probable chromatin-remodeling complex ATPase chain
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120675959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120675959
03036 Chromosome and associated proteins [BR:
pvir03036
]
120675959
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
120675959
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
120675959
RSF complex
120675959
WICH complex
120675959
B-WICH complex
120675959
NORC complex
120675959
BRF complex
120675959
NuRF complex (fruit fly)
120675959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
ResIII
HAND
Myb_DNA-binding
HDA2-3
DEAD
DBINO
CHDII_SANT-like
AAA_14
ToxN_toxin
Motif
Other DBs
NCBI-GeneID:
120675959
NCBI-ProteinID:
XP_039813095
LinkDB
All DBs
Position
5N:complement(24693082..24701868)
Genome browser
AA seq
1109 aa
AA seq
DB search
MAKPVKYEEEEEEEISSSAEEEEDDQSDAAGSGSGEEGDEDEEDAAAPPAGEEEEAEGEG
QQELEEEVDEEEIEAVTTGAGAEEEEDAGAAAPAEGDDESQSTEDDEAAPGDNGDETDAV
VGKREKARLKELQKMKRQKIQEILDTQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGS
QSKEKKPRGRGRHASKMTEEEEDEEYLKEEEDALAGAGGTRLVSQPSCIKGKMRDYQLAG
LNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMKE
IQRFCPVLRAVKFLGNPEERNHIRDNLLQPGKFDACVTSFEMAIKEKTALRRFSWRYIII
DEAHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDE
WFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRAL
LQKDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAESGPPYTTGEHLIENAGKMVLLD
KLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNKPG
SEKFVFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCT
EYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITD
EDIDRIIAKGEETTAELDAKMKKFTEDAIKFKMDDNAELYDFDDEKDENKVDFKKLVSDN
WIEPPRRERKRNYSESEYFKQALRQGAPAKPREPRIPRMPHLHDFQFFNNQRLNELYEKE
VRYLMQANQKKDTIDGEDEDQLEPLTVEEQEEKEQLLEEGFASWTRRDFNTFIRACEKYG
RNDIKSIASEMEGKTEEEVQRYAKVFKERYKELSDYDRIIKNIERGEARISRKDEIMRAI
GKKLDRYKNPWLELKIQYGQNKGKFYNEECDRFMLCMVHKLGYGNWDELKAAFRMSPLFR
FDWFVKSRTTQELARRCDTLIRLVEKENQEYDEQERQARKEKRLAKNMTPTKRGASRNSE
GETTPSNSFKRRRQSLMDDYVGSGRRKRG
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccggtgaagtacgaggaggaggaggaggaggagatctcgtcctccgccgag
gaggaggaggatgaccagtccgacgcggccggctccggatctggcgaggagggggacgag
gacgaggaggacgccgcggcacctcccgcgggggaggaggaggaagctgagggagagggg
cagcaggagttggaggaggaggtcgatgaggaggagatcgaggccgtcactaccggcgcc
ggcgccgaggaggaggaggacgccggtgccgcggcccctgcggaaggcgacgacgagtcc
cagtccaccgaggacgacgaggctgccccgggcgacaacggcgacgagactgatgcagtg
gtcgggaagcgtgagaaagccaggctaaaggagcttcagaagatgaagaggcaaaaaatc
caagaaatattggatactcaaaatgctgccattgatgctgacatgaacaataaagggaag
ggacgattgaaataccttcttcagcagacggaaatatttgctcactttgcaaaaggaagt
caatctaaagagaaaaaaccacgtgggcggggacgacatgcgtcgaagatgacggaagaa
gaggaagatgaagaataccttaaggaggaggaagatgcccttgctggtgcagggggaaca
cgattagtttctcagccttcatgcattaaaggaaaaatgcgagactaccagttggctggg
cttaattggctgatacggttgtatgagaatggtatcaatgggattttggctgatgagatg
ggccttgggaaaactcttcaaaccatttcactgctgggctacctgcatgaattcagaggt
ataactggtcctcacatggttgttgcaccgaagtccacacttggtaactggatgaaggaa
atccagcgtttttgccctgtccttcgtgctgtgaagttcttgggaaatccagaagagagg
aaccatataagggacaatttgctacagcctgggaaatttgatgcgtgcgtgactagtttt
gaaatggcaatcaaagaaaaaactgcattaaggcgtttcagctggcgctacattattatt
gatgaagctcaccggataaaaaatgagaattctcttctatcgaagactatgaggatttac
aacactaattatcgcctcctcatcacaggcactccgctgcagaataatctccacgagctt
tgggctctcctcaacttcttgctacctgaaatatttagctccgctgagacctttgatgaa
tggtttcaaatttctggagaaaatgatcaacaggaggtggtccagcagctccataaggtc
cttcgcccatttcttcttcggaggcttaaatctgatgtagaaaagggtttacctccaaag
aaggaaaccatacttaaagttggaatgtctcagatgcaaaagcagtactatcgtgctctc
cttcagaaagatttagaggttattaatgctggtggtgaacgcaagcgattgcttaacatc
gccatgcaattgcgcaaatgttgcaaccatccatatctattccaaggagctgaatctggc
ccgccctacacaactggtgaacatctaattgagaatgcaggaaaaatggtgctgttagat
aaattgctgcccaagctaaaggaacgtgattccagagtccttatcttttcacagatgacc
aggcttttggatatcttggaagattatctcatgtacagaggatatcagtattgccgcatt
gatggaaatacaggcggagaagatcgtgatgcatccattgaagcttttaacaagccagga
agtgagaagtttgttttcttgctttcaactcgggcaggtggccttggtatcaacttggcc
actgctgatgttgtggttctttatgacagcgattggaatccacaagctgatctgcaagct
caagaccgtgcgcataggataggccagaagaaagaggttcaagtttttcgcttttgcacc
gagtatactattgaggaaaaagtgattgagagagcatacaagaagcttgcattggatgct
ttggttattcagcaaggacgtttggcagagcagaaaactgtcaataaggatgatcttctg
caaatggtgaggtttggtgctgaaatggttttcagttctaaagacagtacaataacagat
gaggatatagaccgtattatagctaaaggagaggagacaacagcagaacttgatgcgaaa
atgaaaaagttcaccgaggatgccattaaatttaagatggatgataatgctgaattgtat
gattttgatgatgagaaggatgaaaacaaggttgatttcaagaaactcgtcagtgataac
tggatcgagccacctagaagagaaaggaagaggaactactctgagtctgagtactttaag
caagctcttcgccaaggtgcaccagcaaagcctagggaaccaaggattccaagaatgcca
cacttgcatgatttccagttcttcaacaaccaaaggctaaatgaattgtatgaaaaggaa
gtgcgatacctcatgcaagcaaaccagaagaaagataccatagatggtgaagacgaagat
cagttggagcctttgactgtagaggaacaggaagagaaggagcagttactagaagagggt
tttgcatcctggacgaggagagatttcaacacctttattcgtgcatgtgagaaatatggt
cgaaatgacataaaaagcatagcctctgaaatggaagggaaaacagaagaggaagttcag
cgatatgcgaaagttttcaaggagcgatacaaggaattgagtgattatgatagaattatc
aagaatattgaaaggggtgaagcaagaatatcccgtaaggatgagattatgagggccatt
gggaagaagctagaccgctacaagaacccatggttagagttgaaaattcagtatggccaa
aataaagggaagttctataatgaggaatgcgaccgttttatgctttgtatggttcataaa
cttggctatgggaactgggatgaactgaaagctgccttccgcatgtctcccttgttccga
tttgactggtttgtgaagtctagaactacacaagagttggctaggcgttgtgacaccctt
attcgactggttgagaaggagaatcaagaatatgatgagcaagaaaggcaggcaaggaag
gagaaaaggcttgctaagaacatgactccaacgaagcgaggggcatcaagaaattcggag
ggtgagacaactccgtcaaattcattcaagaggcggcggcagtcccttatggatgattac
gtgggctcaggaaggcgtaaaagagggtga
DBGET
integrated database retrieval system
