Panicum virgatum (switchgrass): 120676042
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Entry
120676042 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase SINA-like 5
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120676042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120676042
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120676042
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120676042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_RING
Sina_ZnF
Motif
Other DBs
NCBI-GeneID:
120676042
NCBI-ProteinID:
XP_039813192
LinkDB
All DBs
Position
5N:complement(10096849..10098177)
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AA seq
333 aa
AA seq
DB search
MAEQQHKRGSPLDSDGRLTQVAKKLRELEAIVPSCVVNQEREEPEEGEVSPVGVRRAGAV
APAATMEDEPQVKLRFGLSLFHCRACLRPLRPPTVKCSAGHVVCDACRGSHALAFAGAAA
FAPSPDVDVYMRGARLACPNAEFGCESCSVYYQAGEHERACQWAPCRCPDLGCDASDSPA
RLAAHFAACHAWPITDVSYAKVHRIALPRERALHFLVSKEDSQVFLVSSSALGAGAASAV
VASLACVRANGDAAAGAPLFRCTLWVQDARGAGNVSRVTFAVPSSDLSGGFVAAEQSMFL
AVPPRRTSWSASTRLRPLVGTPSLHQLRCPTFV
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggcagagcagcagcacaagaggggctcgccgctggacagtgatggccgcctgacccag
gtcgccaagaagctcagggagctggaggccattgtacccagctgcgtggtcaaccaagaa
cgagaagaaccagaggaaggagaggtcagccctgtcggcgtcaggagagcgggagctgtg
gcgccggcggcgaccatggaggacgagccgcaggtcaagctgcggttcggcttgtccctg
ttccactgtcgcgcttgcctccgccccctcaggcctcccacggtcaagtgcagcgccggg
cacgtcgtctgcgacgcgtgccgcggcagccacgctctggcgtttgccggcgccgccgcc
ttcgcccccagccccgacgtggacgtctacatgcgcggcgccaggctggcgtgccccaac
gcggagttcggctgcgagagctgctccgtctactaccaggccggcgaacacgagcgcgcc
tgccagtgggcgccctgccgctgcccggaccttggctgcgacgcctccgactcgccggcg
aggctggccgcccacttcgcagcctgccacgcctggcccatcaccgacgtgagctacgcg
aaggtgcacaggatcgccctgccacgggagcgagccctgcacttccttgtgagcaaggag
gattcgcaggtgttcctcgtgtcctcgtccgcgctcggcgccggcgcggcgtccgcggtg
gtggcgtcgctggcgtgcgtgcgggcgaacggcgacgcggcggcgggggcgccgctgttc
cggtgcacgctctgggtgcaggacgcgcgcggcgccgggaacgtgtcgagggtcacgttc
gcggtgccgagcagcgacctgtccggcgggttcgtggccgcggagcagagcatgttcctg
gccgtgccgccgcgccggacctcatggtccgcatcgacaaggctgcgtccgctggtggga
actccatcactccaccagcttaggtgcccgacctttgtgtag
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