Panicum virgatum (switchgrass): 120676130
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Entry
120676130 CDS
T07260
Name
(RefSeq) RHOMBOID-like protein 1
KO
K27605
rhomboid-like protein, plant [EC:
3.4.21.105
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120676130
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.21 Serine endopeptidases
3.4.21.105 rhomboid protease
120676130
Peptidases and inhibitors [BR:
pvir01002
]
Serine peptidases
Family S54: Rhomboid family
120676130
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Gene cluster
GFIT
Motif
Pfam:
Rhomboid
7TM_GPCR_Srv
Motif
Other DBs
NCBI-GeneID:
120676130
NCBI-ProteinID:
XP_039813287
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Position
5N:complement(7886298..7889521)
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AA seq
419 aa
AA seq
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MPRRGETAVVPIDAASGERGGQERPKSERHRSHGPGHHGRHGPHHQHRSRPPPPPPPVFR
PFRRWFPFLVPLFIVANVALFVLTMYVNDCPAHARAAGAAIGGSVGESATAQGCWLAPEL
GRLAFQSFKENPLVGPSSATLLKMGALETSKVTKDHEGWRLITCIWLHAGVIHILANMLS
LVLIGIRLEKEFGFLRIGTLYVISGVGGSLLSSLFMVSNISVGASGALFGLLGSMLSELI
TNWTIYENKIAALMTLVMIIVINLAVGILPHVDNFAHLGGFTSGFFLGFVLLMRPQFGYI
NQKNSPLGYPMGVTKQKFKIYQIILFVIALVILISGFTVGLVLLFQGFNASEHCSWCHYL
SCVPTSKWSCKAPSNYCMSSQLGNQLNLTCQSTGKAATYVLSNPNNTEAIKNLCVGLCS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgccgcggcggggcgagacggcggtggtccccattgacgcggccagcggcgaacgagga
ggccaggagcggcccaagagcgagcgccaccggagccacggcccgggacaccacggccgc
cacggcccgcaccaccagcaccggagccgcccgccgccgccgccgccgcccgtgttccgc
ccgttccggcggtggttcccgttccttgtgccgctcttcatcgtcgccaatgtcgccctc
ttcgtcctcaccatgtacgtcaacgattgccccgcgcacgcccgggccgccggtgccgcg
atagggggatccgtcggcgagagcgccaccgcgcagggctgctggctcgcgccggagctc
ggcaggttagcgttccagtcattcaaggagaaccccctcgtcggcccctcctccgccacg
ctgttgaaaatgggcgcactggaaaccagtaaagttaccaaagatcacgaaggctggcgc
ctcattacatgcatttggttgcatgctggagttatccacatacttgctaatatgttgagt
ctcgtattgatcggaatcaggcttgagaaggagtttggcttcttgaggattggtacactg
tatgtgatctctggtgttggtggcagcttgctgtcatctttatttatggtgtcaaatata
tctgttggtgcttcaggtgcactatttggactattgggctccatgctatcagagctcata
acaaattggacgatatatgagaacaagatcgcagcactcatgactctggttatgatcatt
gtcatcaacttagctgttgggatccttccacatgttgacaacttcgctcacctcggagga
tttacatcagggttctttctcggttttgtgttgctaatgcgaccgcagtttggatatatt
aaccaaaagaactctcctcttggatatcccatgggtgtaactaaacagaagttcaagata
taccaaatcatactttttgttattgcgctagtgatattaatttctgggtttactgttggc
ttggtgttgctttttcaaggcttcaatgctagtgaacactgttcttggtgccattatttg
agctgtgtgcctacttcaaagtggagctgcaaagcaccaagtaactattgcatgtcttca
cagcttggaaatcaattaaatctgacatgccaaagcactggaaaggccgcaacatatgtt
ctcagcaatccaaacaacacggaagcaattaaaaatctttgtgttggcctttgcagttaa
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