Panicum virgatum (switchgrass): 120676231
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Entry
120676231 CDS
T07260
Name
(RefSeq) endoribonuclease Dicer homolog 3a-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120676231
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120676231
microRNA pathway
RISC loading complex
120676231
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
DEAD
ResIII
PAZ
dsrm
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
120676231
NCBI-ProteinID:
XP_039813396
LinkDB
All DBs
Position
5N:complement(67820076..67830147)
Genome browser
AA seq
1711 aa
AA seq
DB search
MYAVWILSPNDRLPDIPSPPLLPEPPLSTLSARAAPSSPPRSPAQLQLESSWCGSNLRTS
DKVDMNPLKRPSESLLQEDEAGMHKLQKRECQDFTPRRYQLDLYEVATRRNTIAMLDTGA
GKTMIAVMLIKHFGMISRTNNDQKIIIFLAPTVQLVTQQFEVIKSYTDFEVEHYHGAKGV
DQWKAHRWEEQLSKFQVVVMTPQVLLDALRQAFLILDMVSLMIFDECHHATGNHPYTRIM
KEFYHRSEHKPNVFGMTASPVKRKGISSDLDCENQLSELENILDSKIHTVVDREEIELCI
PSAKEVNRYYEPRTVSFEDLSAELGILYFKYDVLIAELHCRLTNQYKDADQITKESRRRL
SNSLAKICYCLEDVGLLCASEATKICIERGHRKGWLKGGGDATDQQSDANGSGLFANSMI
HMKFFEEVLSIIDKRLQQQQGIDALLNSESGYVEAIKGGYISPKLHELIQVFLSFSDFDN
VRCLIFVDRKITARVIERTMKKIARLAYFRISFLTGGSSSVDALTPKEQKDTLDSFRSGK
VNLLFTTDVAEEGIHVPDCSCVIRFDLPKTTRSYVQSRGRARQKDSQYILMIEQGNVKQN
DLISALMKSKTSMAEIASNREPEDSHPSFFPTEEINEYHISTTGAKITTDSSISVLYQYC
DKLPKDKYYTPRPTFQFTHYGDGYECTVTLPSSAMFQLLVGPKARSMQKAKQLVCLDACK
RLHQLGALDDHLSPLAEETPLENLSKASICSSGSGLGTTKRKELHGTTKVLSMSGSWASD
RSVTKLQGYKLNFICDQVGQKYSDFVLLIDANIAKEAATLDIDLYLHDKMVKASVSPHGP
LELDAQQMEKAKLFQALLFNGLFGKLFTGSKASKTPREFILKKDDTFLWDNANMYLLLPV
DPAPDSHKSVFINWNVIDVAATTVGLMRSIYSKDQQNLIYKLNPKINGGDLIHLANKSCK
VDDLRNMVVLAVHTGKMYTALDVADLCANSTFDGASDKKEAKFRTFAEYFLKKYSILLCH
PSQPLLVLKPTHNPHNLLSSKIRDEGNHVENKNRANSLVHMPPELLIPIDLPADVLRVFY
LFPSLMYRIESLMLASQLRSEIAYTGSDISSFLILEALTTLRCCEDFSMERLELLGDSVL
KYAVSSDLFLRFPNKHEGQLSSRRQEIICNATLHRFGIERNIQTYIRDAAFDPRRWCAPG
QLSIWPCPCECPVNSEVITEDIHRVDDKSIIIGKACDKGHRWICSKTISDCVEALIGAYY
VGGGLRAAFSVLKWLQIEIEFEEDLIVKAMLNASVRNYLPKVDVIELLEAKINYVFSVKG
LLIEALTHPSQQESGATYCYQRLEFLGDAVLDILLTQHLFLSHKDTDEGELTDLRSASVN
NENFAQVAVRHNLHHFLQHSSGLLQDQITEYVSSLEGSSMHRTNLSSSGSSRGPKVLGDI
VESIAGAILIDTKFDLDVVWRVFKPLLSPIVTPENLELPPFRELHEWCDKSGYFLGIKCE
NREDNIMATLNLQLKDLLLVRQGRGKNKVDAKAHAASLLLRDLEEKGLVIPKNASRTEQS
EKKSGSPKHNKNLLDAMGTQNIAPPKQKDLTMSSTAPCSVFDKALVVKVKLSKGGPRISL
YESCKKLQWPMPTFESVKVEPSVCPSSGGSSQKVVPQGFAFASTITLHIPNGDVISLTGD
GRPDKKSSQDSAALLMLYELQRRGRFQVQEV
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcagtttggattctatctccaaacgatcgattgcccgatattccatcccctccc
ttgctacccgagccgccgctctcgacgctgtcggcccgtgcggcgccctccagtcctcca
cgctcccctgcccagctgcagctcgagtccagctggtgcggcagcaacctacgaacatcc
gacaaggtggacatgaatcctttgaagaggccatccgaatcattacttcaagaagatgaa
gcaggcatgcataaactgcagaagagggagtgtcaggatttcacccccagaaggtaccag
cttgatctttatgaggttgcaacacgtcggaacacaattgcgatgcttgacacaggagct
gggaagacaatgattgctgtcatgctcatcaagcattttgggatgatcagcagaacaaat
aatgaccaaaagatcatcatattccttgcgccaacagttcaactcgtcacacagcaattt
gaggtgattaagagctacactgattttgaggtggagcactatcatggtgcgaagggtgtt
gatcaatggaaggctcacagatgggaagagcaactttcaaaatttcaggttgtggtcatg
acaccacaggtgctgctagatgctttacgccaagctttcttgatcttagacatggttagt
ctcatgatatttgatgaatgccatcatgcaactggtaaccacccttatacaaggataatg
aaggagttctatcacagatctgagcataagccaaacgtgtttggtatgacagcatcacct
gttaaaaggaaaggcatctcttctgatttagactgtgaaaatcagctctctgaattggaa
aatattttagattccaagatacacaccgtggtggatagagaagagattgaactttgcatt
ccttcggcaaaagaagtgaatagatactatgagccaagaactgtttcttttgaagattta
agtgcagaactaggaattttgtatttcaagtacgatgtgctgatagcggaattgcattgt
agactgaccaaccaatacaaagatgctgatcaaataacaaaggaatcacggaggcgtctc
tctaattctttagcaaagatttgctattgtcttgaagatgtcggtcttctttgtgcgagt
gaggctactaaaatttgcattgaaaggggtcacagaaagggttggctgaagggaggcggt
gacgccaccgatcagcaaagtgatgcaaatggatcaggcttgtttgcaaattcaatgatt
catatgaagttctttgaggaagtgttgagtataattgataaacgcctccaacagcaacaa
ggaattgatgcacttttgaactcagagagtggatatgtggaagcaataaaagggggctat
atttcaccgaagctccatgagctcatccaagtatttctctctttcagtgactttgataat
gtccgatgccttatttttgtggatcgaaagattactgccagagtcattgagcgtactatg
aagaaaatcgcccgactcgcatatttcagaatctcttttctaactggtgggagttcttct
gtggatgcactgacccctaaagagcaaaaagacacactcgattcgttccgctctggaaag
gtcaacttactatttactacagatgttgcagaagagggtatccatgtcccagactgctcg
tgtgtaatacgatttgatttgccaaagactacccgcagctatgtgcagtcacgaggacga
gcccgacagaaggactctcagtacatactaatgattgaacagggaaatgtgaaacaaaat
gacttaatatctgcccttatgaaaagtaagacatcgatggccgagattgcttcaaaccga
gagcctgaagattcacaccccagtttctttcccacagaagaaataaatgaataccatata
agcacaacaggagccaaaataactactgattccagcatcagtgttctctaccagtattgt
gacaaacttccaaaagacaagtactacaccccaagacccacgtttcagttcacccattat
ggtgatggttatgagtgcacagtaacattaccatctagtgccatgtttcagcttttagta
ggtccaaaagcaagaagcatgcagaaagcaaagcagcttgtttgccttgatgcatgtaag
aggctgcatcagctgggagcacttgatgaccacctttctccattggctgaagagacacca
ttagaaaatttgagcaaagctagtatctgctcatccggttcaggtttaggtacaaccaaa
cggaaagagctgcatggtacaaccaaggttctttctatgtctggctcttgggcttcagat
agaagtgttactaagcttcaaggctacaagttgaatttcatttgtgatcaagttggccag
aaatactctgactttgtcctgttaattgatgcaaatatagcaaaagaagcagccactttg
gatattgatctatatttgcatgacaagatggtaaaggcttcagtttctccacatggacct
cttgagttggatgctcagcagatggaaaaagcaaaactatttcaagcacttctctttaat
ggtttgtttggaaaactgttcactggatcaaaagcatccaaaaccccaagggagtttatt
ctcaagaaagatgatacattcctttgggacaatgcaaatatgtatttgcttttacctgtg
gatcctgctccggattctcataaaagtgttttcattaactggaatgtgattgatgtagcg
gctacaactgttggacttatgaggagcatttattcgaaggaccaacagaacctgatctat
aagcttaatcctaaaattaatggtggagatctcattcatttggccaacaagtcatgtaag
gttgatgatcttagaaatatggtagtcctagcagttcacacagggaagatgtatactgct
cttgatgtagctgatttatgtgctaatagcacatttgatggtgcttctgataagaaagaa
gcaaaatttcggacatttgcagaatattttctgaagaagtacagcatacttctttgtcat
ccctcacagccattgctagtgttgaaacccactcataatcctcacaaccttctttcatca
aagatcagagatgaaggcaaccatgtggaaaacaaaaatagggccaatagccttgttcac
atgcctccagagctgctgattcctattgatttacctgctgatgttttgagagtattctat
ttgtttccgtctctgatgtatcgcattgagtcactaatgctagccagccaactaagaagt
gaaattgcatacacaggatctgatatatcaagcttcctgattctggaagctcttacaacc
cttagatgctgcgaggacttctctatggagcgtttagagttactgggggactctgtactt
aagtatgctgtgagttccgatctcttcctcagatttcctaataagcatgaggggcagtta
tcgtccagaaggcaagaaattatatgtaatgcaacacttcataggtttggtattgaacgc
aatatacagacttacatacgtgatgctgcatttgatcctcgtagatggtgtgcaccagga
cagctgtccatctggccctgtccttgtgaatgcccagtaaactctgaggttataactgag
gatattcatagggttgatgacaaatctataattataggcaaggcgtgtgacaagggacac
agatggatatgttccaaaaccatctctgattgtgtcgaggctttaattggggcatattat
gtgggaggcggattaagagcagccttttctgttctcaaatggttgcagattgagattgaa
tttgaggaagacctgattgtgaaagccatgttgaatgcttctgtgcgcaattatcttccg
aaagttgatgtaattgaattgcttgaagcaaaaataaactatgttttttcggtgaaaggt
ttgctgatagaggctctcacccacccctcacagcaagaatcaggagcaacatactgctac
cagcgcttggagttccttggcgatgcagtcttggatattttactaacgcagcaccttttc
cttagtcataaagacaccgatgagggggagctgacagatttacggtctgcatcagtaaat
aatgaaaattttgctcaagttgcagtaaggcataatctccaccactttctccagcattct
tctgggcttctccaagaccaaatcactgaatatgtgagtagtctggaaggctcatccatg
cacagaaccaacctttcatccagtggatcatctagggggccaaaagttctaggcgatatt
gtagaaagtattgcaggtgcaattcttatagacaccaaatttgatttggatgtagtttgg
agggttttcaaacctcttctttccccaattgtcacacctgagaatctggagttacccccg
ttcagagaacttcatgagtggtgtgacaagagtgggtactttttaggaattaaatgcgaa
aatcgagaagacaacataatggctactcttaatctacaactcaaggacttgcttcttgtg
aggcaaggtcgtgggaagaacaaagtagatgcaaaagcacatgcagcttccttattgctc
agggatctggaggaaaaaggccttgtgattccaaagaatgccagcagaacagaacaatct
gaaaagaaatctggtagtccaaaacataacaagaacttgcttgatgctatgggcacacag
aatatagcaccaccaaagcaaaaggacctaaccatgtcaagtactgctccctgctctgtt
tttgataaagcattggttgtgaaggttaagttgagtaaaggaggacctcgtatatcattg
tacgagtcatgtaaaaagttacagtggccaatgcctacatttgaatctgtgaaagtcgaa
ccaagtgtgtgcccctcctctggtggttcctcacaaaaggttgtgcctcaagggttcgca
ttcgcttcgacaataacattgcacataccaaatggcgatgtcatcagccttacaggagat
ggacgccccgataagaagagctcacaggattctgctgcgctgctcatgctctatgagcta
cagcggcgaggtagattccaagtccaagaagtatga
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integrated database retrieval system
