KEGG   Panicum virgatum (switchgrass): 120676275
Entry
120676275         CDS       T07260                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    120676275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120676275
   03036 Chromosome and associated proteins [BR:pvir03036]
    120676275
Enzymes [BR:pvir01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     120676275
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    120676275
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     120676275
    Noncanonical PRC1 (PRC1.1)
     120676275
    Noncanonical PRC1 (PRC1.3/1.5)
     120676275
    Noncanonical PRC1 (PRC1.6)
     120676275
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-C3HC4_4 zf-RING_4 zf-RING_6 zf-UDP zf-Nse zf-RING_11 zf-rbx1 TRAF3_RING zf-C3HC4_5 ZNF512_C2HC
Other DBs
NCBI-GeneID: 120676275
NCBI-ProteinID: XP_039813444
LinkDB
Position
5N:complement(60190559..60200050)
AA seq 482 aa
MPAQKRRLPSPSSKPRDHVAAPGSDAATAAGGGAGEGRGGRPPLPSGSAAKRRLTEPKPQ
RGLEDDSDAEDGGAADGDSESSQSDGGGGYDEFMLVKLAEIRKEVQCPICLGIIRKTRTV
MECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAVLYPDIDKYEEEE
LAFSEQEKTRNKKIQETIEETFRRQSEAIVKKRSTAKATDTAFGRKYRRNMRTRGRGRTI
TPDITPTGSDDEDREEENANEVTKEPSSADDHSPELRHKKCRKRSASQASPARTIGSSDH
SFEENDEVVGGKEILATSPLRGEMLAWGKNGTRSQNRHGSANSNGRMGRSGRIVKLVDHL
RTTDEMDKEFHLYLVLLPIDGQSIPNLEKPYLSCRPTLSVQHLVKFIAHQLSRKVEELEM
YIRMDRHNGSVGSKASSTVESKRHSFDDLERLRGDKLLSDLQPSFASSNGDLELLYAFKT
QD
NT seq 1449 nt   +upstreamnt  +downstreamnt
atgcccgcgcagaagcgccggctcccgtcgccgtcctcgaaaccccgcgaccacgttgcg
gctcccggctctgatgccgccaccgccgccggcgggggcgcaggggaagggaggggagga
cgcccgccgctgccgagcgggagcgccgccaagcggaggttgaccgagccaaagccgcag
cgcggactcgaagacgattcagacgcggaggatggcggcgccgcggacggcgacagcgag
tcctcgcagagcgacggcggcggcggctacgacgagtttatgctagtgaaattagcagag
atacggaaggaggtccagtgccctatctgcttaggaattattcggaagacaaggacagtt
atggaatgtttgcaccgattctgtagagactgcattgataaatctatgcgactaggaaat
aatgaatgcccagcgtgtcgcactcattgtgcaagcagacgttctttgagggatgatcct
aattatgatgcactaattgcagtcttatatccagatattgacaagtatgaggaagaggaa
cttgctttcagtgaacaggagaagactcggaataaaaagattcaagaaaccattgaggaa
acgtttcgaagacagtccgaggcaattgttaagaagcgttccacagcaaaagcaactgac
actgcctttggaaggaaataccggagaaatatgcgaacacggggcagaggcagaaccata
acccctgatattacccctactggctctgatgatgaggatagagaagaagaaaatgccaat
gaggtcaccaaagagccatcttctgctgatgatcattctccagaattaagacataaaaaa
tgtaggaagaggtctgcatcacaagcttcacctgctagaacaattggcagtagtgaccac
agctttgaggagaacgatgaagtagttggtggaaaagaaattttggccacctccccattg
cggggagagatgcttgcatggggaaaaaatggtacacggagccagaatcgacatggcagt
gctaattcaaatggcagaatggggaggagcggacgcattgtgaaattggttgatcacctc
cgtactactgatgaaatggataaagagttccacttgtatcttgttctccttccaatcgat
gggcaaagcatacctaacttggaaaagccctatctaagttgtcgaccaaccttgtccgtt
caacaccttgtaaagtttattgctcatcaattgtctcggaaagtcgaggaactggagatg
tacataaggatggaccgccacaatggtagtgttggctcaaaggcttccagtacagttgag
tcaaaacgacattcatttgatgacttggaaagattgagaggagataaacttctttcggac
cttcagccttcgtttgcctctagcaacggtgatctggaattgctgtatgctttcaaaact
caagactag

DBGET integrated database retrieval system