KEGG   Panicum virgatum (switchgrass): 120676315
Entry
120676315         CDS       T07260                                 
Name
(RefSeq) tubulin beta-5 chain
  KO
K07375  tubulin beta
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04145  Phagosome
pvir04517  IgSF CAM signaling
pvir04814  Motor proteins
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04517 IgSF CAM signaling
    120676315
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    120676315
  09142 Cell motility
   04814 Motor proteins
    120676315
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pvir03036]
    120676315
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:pvir04812]
    120676315
   04147 Exosome [BR:pvir04147]
    120676315
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Centrosome formation proteins
   Microtubules and associated factors
    Other tubulins
     120676315
Cytoskeleton proteins [BR:pvir04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    120676315
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   120676315
  Exosomal proteins of colorectal cancer cells
   120676315
  Exosomal proteins of bladder cancer cells
   120676315
SSDB
Motif
Pfam: Tubulin Tubulin_C Tubulin_3 Misat_Tub_SegII Tubulin_2
Other DBs
NCBI-GeneID: 120676315
NCBI-ProteinID: XP_039813485
LinkDB
Position
5N:16283302..16287710
AA seq 445 aa
MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV
PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL
RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM
CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPCG
LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
EYQQYQDATADEEGDYEDEEVIQDE
NT seq 1338 nt   +upstreamnt  +downstreamnt
atgagggagatcctccacatccagggcggccagtgcggcaaccagatcggctccaagttc
tgggaggtggtgtgcgacgagcacggcatcgaccccaccggccgctacgtcggcacctcc
gatctccagctcgagcgcgtcaacgtctactacaatgaggcctcatgcggccgcttcgtg
ccgcgcgccgtgctcatggacctcgagcccggtaccatggacagcgtccgcaccgggccc
tacggccagatcttccgccccgacaacttcgtcttcggtcagtctggtgctgggaacaac
tgggccaagggccactacactgagggagctgagcttatcgactccgtgcttgacgtcgtg
aggaaggaggctgagaactgcgattgtctccaaggcttccaagtgtgccattcccttgga
ggaggcactggatctggaatgggcactcttcttatctcaaagatcagggaggagtaccct
gataggatgatgctcacattttctgtcttcccttcgcctaaggtgtcagatactgttgtt
gagccatacaatgcaacattgtctgtgcatcagttggtggagaatgcggatgagtgcatg
gttcttgacaatgaggctctttatgacatttgtttccgcactctgaagctaaccactcct
agctttggagacctgaatcacttgatcagtgcgacaatgagcggtgtcacttgctgcctc
cggttcccaggacagctgaactctgaccttcgcaagcttgcagtcaacttgattcccttc
cctcgtctccacttcttcatggtcggctttgcgccactcacctcgcgtggctcgcagcag
taccgtgccctcactgtccctgagctgacccagcagatgtgggatgccaagaacatgatg
tgtgctgctgacccgcgccatggccgctacctcacagcctctgccatgttccgtggcaag
atgagcaccaaggaggtggacgagcagatgatcaatgtccagaacaagaactcttcctac
ttcgtggagtggatcccaaacaatgtcaagtccagcgtctgtgacatcccaccgtgtggc
ctctccatggcctccaccttcatcggcaactccacctccatccaggagatgttccgccgt
gtgagcgagcagttcactgctatgttcaggaggaaggctttcttgcattggtacaccggt
gagggcatggatgagatggagttcactgaggctgagagcaacatgaatgacctggtgtcc
gagtaccagcagtaccaggacgccactgcggacgaggagggcgactatgaggacgaggag
gtgatccaggacgagtaa

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