Panicum virgatum (switchgrass): 120676318
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Entry
120676318 CDS
T07260
Name
(RefSeq) ABC transporter G family member 53-like isoform X1
KO
K08711
ATP-binding cassette, subfamily G (WHITE), member 2, PDR
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120676318
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120676318
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCG (White) subfamily
ABCG2, 3 subgroups
120676318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC2_membrane
ABC_tran
PDR_assoc
ABC2_membrane_7
AAA_21
ABC2_membrane_3
ABC_trans_N
AAA_25
AAA_16
AAA_29
RsgA_GTPase
AAA
AAA_22
AAA_30
PDR_CDR
nSTAND3
AAA_19
RuvB_N
IstB_IS21
AAA_11
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
120676318
NCBI-ProteinID:
XP_039813490
LinkDB
All DBs
Position
2K:complement(40145892..40154473)
Genome browser
AA seq
1452 aa
AA seq
DB search
MDDAGEIHALGSLRREGSVWSAAGDNVFSLSSRGDGGGGADDDEEALRWAALEKLPTYDR
ARTAVLAMPEGVLREINVEKLGPQERHALLQRLAWVGDDHQRFLSKFKDRVDRVGIELPK
IEVRYDNLNVEAEAYVGSRGLPTIFNTYANVLEGIANVLHLTPSRKQKISILHNVSGIIK
PHRMTLLLGPPGAGKTSLLLALAGTLPSSLKVTGNITYNGHTMDEFEARRSAAYVSQHDL
HMGELTVRETVNFSAKCQGIGHRYDLLVELSRREKEAGIVPDPETDIYMKAAATGEQKAD
VVTNHILKVLGLDICADTIVGNNMLRGISGGQKKRVTTAEMLVTPGRALFMDEISTGLDS
STTFQIVNSIRQTIHIVGGTAVIALLQPAPETYELFDDIILLSDGQVVYSGPREHVLQFF
ESVGFKCPQRKGVADFLQEVTSRKDQRQYWKHSDETYRYVPVKEFADAFQSFHIGEAIRN
ELAVPFDKSTSHPAALKTSKYGASMKELLKANINREILLMKRNSFVYIFKAVQLTLMAII
AMTVFLRTNMHHDSLTNGRIYMGALFFGILMIMFNGLAEIGLTIAKLPVFFKQRDLLFYP
AWTYSLPSWIIKTPLSLLNVTIWVFITYYVIGFDPNVERLFRQFLLLLLMNEASSGLFRF
IAGLARHQVVASTLGSFGILIFMLLGGFLLARENVKKWWIWGYWISPLMYAQNAISVNEF
LGDSWNKILPGSTEPLGKLVLESRGLFPEAKWYWIGVGALLGYVLLFNILYTVCLTFLKP
FDSNQPTISEETLKIKQANLTGEVLEASSRGRVPSNTVTTSTVDGSNGEADSNHTTVNSR
PVNKGMVLPFVPLSITFEDIRYSVDMPEEIRAQGVKETRLQLLKGISGSFRPGVLTALMG
VSGAGKTTLMDVLAGRKTSGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPNVTVYES
LAFSAWLRLPADVDSSTRKMFIDEVMELVELLPLKDALVGLPGVSGLSTEQRKRLTIAVE
LVANPSIIFMDEPTSGLDARAAAIVMRAIRNTVDTGRTVVCTIHQPSIDIFESFDELFLM
KRGGEEIYVGPLGRHSCELIKYFEAIEGVSSIKDGYNPSTWMLEVTSTMQEQITGVNFSE
VYKSSELYRRNRTLIKELSTPPEGSTDLSFPTEYSQTFLTQCFACLWKQSMSYWRNPPYT
AVKYFYTTVIALLFGTMFWGVGRKRDNQQDLFNAMGSMYASVIFMGVQNSGSVQPVVSVE
RTVFYRERAAHMYSPLPYALGQVAIELPYIFVQSLIYGVLVYAMIGFEWTAAKFFWYLFF
MYFTLAYYTFYGMMMVGLTPNYNVSSVASTAFYAIWNLFSGFLIPRTRIPVWWRWFYWIC
PIAWTLNGLVTSQFGDVTEKFANGVRISDFVEDYFGYHHDFLWAVAVVVVAFPVLFALLF
GLSLKMFNFQKR
NT seq
4359 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgccggggagatacacgcgctggggagcctgcggcgggagggttcggtgtgg
tcggcggcaggcgacaacgtgttctcactgtcgtcgcgcggggacggcggcggcggcgcg
gatgacgacgaggaggcgctgcggtgggcggcgctggagaagctgcccacctacgaccgc
gcgcgcacggccgtgctggccatgcccgagggcgtgctccgggagatcaacgtggagaag
ctcggcccccaggagcgccacgccctgctgcagcggctcgcctgggtcggcgacgaccac
cagcgcttcctctccaagttcaaggaccgcgtcgaccgagtagggattgagctgcccaag
atcgaagtgcggtacgacaacctgaacgtcgaggcagaggcgtatgtcggcagcaggggc
ctgccaaccatcttcaacacctatgccaatgtgctcgagggcatcgccaatgttcttcac
ttaacaccaagtaggaagcagaaaatatcgattcttcacaatgtcagtggcatcatcaag
ccacacagaatgaccttgctattgggtcctcctggtgctggcaaaacatcgctgcttttg
gccttggctggaacactcccttcaagtctcaaggtaacagggaacataacttacaacggg
cacacaatggacgagtttgaggcccggagatcagctgcatatgtcagccaacatgatctg
cacatgggggagttgacggttcgtgagacggtcaatttctctgcaaaatgccaaggaatt
ggtcaccgttatgacttgctagtggaattgtcaaggagagaaaaggaagcaggtatcgta
ccagatccagaaacagacatctacatgaaggctgctgccacaggagagcaaaaggctgat
gtggtcacaaatcacatactaaaggtcttggggctggatatctgtgctgacacaatcgtt
ggaaacaatatgctgagaggcatatccggaggccaaaagaagcgagtaactacagctgaa
atgcttgtcaccccaggacgagcccttttcatggatgagatatcaacaggacttgatagc
tcaacaacctttcagattgtgaactctatccggcaaaccattcacattgttggcggaaca
gcagttattgctttgttacaacctgcaccagagacatatgaactgtttgatgatataatt
ctcctctcagacggtcaggttgtctacagtggccctcgtgaacatgtgctccagttcttt
gaatcggttggcttcaaatgcccgcagcggaaaggtgtagccgacttcttgcaagaagtt
acatcaaggaaagatcagagacaatactggaaacatagtgatgagacctaccgatatgtt
cctgtgaaggagtttgcagatgcatttcaatctttccacattggcgaggctatacgaaat
gagttggcagtcccatttgacaagagcacgagccatcctgctgcacttaaaacatcaaaa
tatggtgccagcatgaaagagctacttaaagcaaatatcaacagagagatattgttaatg
aaaagaaactcatttgtgtacatattcaaggcagttcagttaacactcatggcaatcatt
gcaatgacggtgttcctccgaaccaatatgcatcatgactcactaacaaatggaaggata
tacatgggtgctctgttctttgggatcctgatgatcatgttcaatggattggcagaaatt
ggcctgactattgcaaagctcccagtttttttcaagcaaagggatcttctcttctatcct
gcttggacatactccttgccatcatggatcattaagacccccctctccttgcttaatgta
acaatttgggtcttcataacatattatgtcattggatttgatcccaatgtagaaagactt
ttcagacagttcctgctcctcttactaatgaatgaggcatcatctgggttgttccgtttc
attgctgggcttgcaaggcatcaggtcgttgcaagcacccttggttcattcggcattctg
atttttatgcttttgggtggatttctcctggcaagagagaatgtgaagaaatggtggatc
tgggggtactggatatcacccctgatgtatgcacagaatgccatatcagtaaatgaattc
ctgggtgacagctggaataagatactccctggttctacagaaccactcggaaagcttgtt
ctggaatctcgtggtctttttcctgaggcaaaatggtactggattggtgtgggtgccttg
cttggatatgtgctgctattcaatatcctctacactgtctgcctcacattcctcaagcca
tttgatagcaatcagccgacaatttctgaggagacattgaagatcaaacaagcaaatcta
actggtgaagttttagaagcatcgtcaagaggaagggttcccagcaatacagtaacaaca
agtactgtggatgggagcaatggtgaagcagattccaaccatacaacagtaaattctaga
cccgtcaacaaaggaatggtcctcccttttgtacctctctccatcacttttgaagatata
agatacagtgtcgacatgccagaggaaatcagagcacaaggtgtcaaagagacccggttg
caactattaaagggtataagtggttcatttaggccaggagtacttactgctctaatgggt
gtcagtggtgctggcaagacaacgctgatggatgtgttggctgggaggaagaccagcgga
tacattgagggcaacattaccatatcaggttacccaaagaagcaagaaacttttgctcgt
gtatcaggatattgtgagcagaatgacatccattcaccaaatgttaccgtctacgagtcc
cttgcattctctgcatggctcagattacctgctgatgttgattcctcaacaagaaagatg
tttattgatgaggttatggagcttgtggaacttttacccttaaaagatgcattggtggga
ttgccgggtgtgagtggattatcaacagagcaaaggaagaggctaacaatagcagttgag
ctggttgctaacccttctatcattttcatggatgaaccgacatctggacttgatgcacga
gcagcagccattgtcatgagggcaatcaggaatactgtggacacaggaagaacagttgtt
tgtaccattcaccaaccaagcatcgatatctttgaatcttttgacgagctcttcctaatg
aaacgtggaggtgaagagatttatgtaggtccattaggccgccattcatgtgaactcata
aaatattttgaggctattgaaggtgtcagcagcataaaagatggctacaacccttcaaca
tggatgctagaagtgactagtacaatgcaagaacaaataactggtgttaactttagtgaa
gtatacaagagttcagaattatataggaggaacagaactttaataaaggagttaagcaca
cctcctgaaggttcaactgacctatcctttccaacggaatactcgcagaccttcctcaca
cagtgttttgcttgcctgtggaagcaaagtatgtcatattggagaaatcctccgtatact
gctgtcaaatacttctatacaacagtgatcgccctgttgtttggaacaatgttctggggt
gtaggcagaaaaagggataatcaacaggatttgttcaatgctatgggctccatgtatgcc
tcggttattttcatgggagtacagaattctggttcagttcagccagttgtatcagttgag
cggacagtcttttacagggaaagggcagctcacatgtactcgcctttgccatatgcattg
ggacaggttgcaattgaacttccatacatctttgttcagtcgttaatatacggtgtgcta
gtgtatgctatgattgggttcgaatggacagctgccaagttcttttggtatctgttcttc
atgtacttcaccctagcgtactacacattttacgggatgatgatggtgggcctgactcca
aactacaacgtctcctcggttgcttccacggcgttttatgccatttggaaccttttctca
ggatttttaataccaagaactagaattccagtatggtggaggtggttctactggatttgc
cccatcgcatggacactcaacggtctggtcacttcacagtttggagatgtaaccgagaag
tttgctaatggggtgcgtatatctgactttgtcgaagactacttcgggtaccatcacgac
ttcctgtgggcagtcgccgtagtggtggttgcatttccagtgctgtttgcattgcttttt
gggctctcgctcaagatgttcaacttccagaagaggtaa
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