KEGG   Panicum virgatum (switchgrass): 120676491
Entry
120676491         CDS       T07260                                 
Name
(RefSeq) snurportin-1-like
  KO
K13151  snurportin-1
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    120676491
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120676491
Spliceosome [BR:pvir03041]
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    120676491
SSDB
Motif
Pfam: SPN1_m3Gcap_bd Snurportin1
Other DBs
NCBI-GeneID: 120676491
NCBI-ProteinID: XP_039813736
LinkDB
Position
5N:complement(12362445..12366176)
AA seq 415 aa
MAPPPEPRRPYKRPAISDQQRRRELALQAQSARRADAQARARALASSLLTTPTPPAATDR
HGEEEEYQEEEHGHTVADVAAAASKLRSSDARRWFARQIMLPEWMVDAPPHLASDWHVFA
RPSGKRCLVVSSNGMTISRARNGSILHRFPSALPNGSKRDISGPASSYSILDCIFHEPDQ
TYYIIDMICWRGYSLYDCTAEFRFFWVNSKLTETSAGDPPSTYHRYRFSAVPIFECTLEG
LQAAYSGSTPYVKDGLLFYNKHAHYQAGITPLTLVWKDETCSQYVIDTDSKGEIPNEQQL
VLELQKDGKLVTSDDPPVVFGSLDKEFIQKSNLLGGNLLRFAVRDESVTLVDGKMQIGEL
QFVGKPNRARAFADSHSKALFQYAARHAPLRIDDLVASIQSNNMELESTDVEMQD
NT seq 1248 nt   +upstreamnt  +downstreamnt
atggcgccgccgccggaaccccggcgcccgtacaagcgcccggccatctccgaccagcag
cgccgccgcgagctcgcgctacaggcgcagtccgcccggcgcgccgacgcccaggcgcgc
gctcgcgccctcgccagttccctcctcaccacccccacccctcctgcggccaccgaccgc
cacggagaggaggaggagtatcaggaggaggagcacgggcacaccgtcgccgacgtcgcc
gcggccgcctccaagctccgcagctccgacgcgcgccggtggttcgcccgccagatcatg
ctaccggagtggatggtcgacgccccgccccacctcgccagcgactggcatgtttttgcc
aggccttctggtaaacgatgcttggttgtgtcttccaatggcatgacgattagcagggcg
cgtaacggatccatccttcaccggttcccttccgctctaccgaatggatcaaagagagac
atatctggcccagcaagctcctactccatactcgattgcatttttcatgagcctgatcaa
acatactatatcattgatatgatttgttggcgaggctattcactgtatgattgcactgcc
gagttcaggtttttctgggtaaactctaagctcacagaaacttcagctggtgatcctcca
tcaacataccatcgatatagattcagtgctgtcccaatatttgagtgcactcttgagggt
cttcaagcagcttactctgggagcacaccttatgtcaaagatggcttgctgttttacaac
aagcatgcacattatcaagctggaatcacacctcttacactagtatggaaagatgaaacc
tgtagccaatatgttattgatactgacagcaaaggagaaattccaaatgagcagcaactt
gtgttggaattgcaaaaggatggaaagctagttacatctgatgaccctccagttgtgttt
ggtagcttggacaaggaattcatacagaagtcaaatctgctaggagggaatcttctccgc
tttgctgtaagagatgaaagtgtgacacttgtggatggaaagatgcagatcggcgagctg
cagtttgttggaaagccaaaccgtgctcgtgcttttgctgacagccattcgaaagctttg
ttccagtatgctgcaaggcatgctcctctgagaattgatgatctggttgcttccattcaa
tcgaacaatatggagcttgaatccaccgatgttgaaatgcaagattaa

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