Panicum virgatum (switchgrass): 120676615
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Entry
120676615 CDS
T07260
Name
(RefSeq) putative E3 ubiquitin-protein ligase SINA-like 6 isoform X1
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120676615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120676615
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120676615
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120676615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_ZnF
Sina_RING
Motif
Other DBs
NCBI-GeneID:
120676615
NCBI-ProteinID:
XP_039813863
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All DBs
Position
5N:complement(10061342..10065782)
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AA seq
336 aa
AA seq
DB search
MSEQRRVSTPESGHGGKRPREQATPGGGIKQERRGQEQVEASQGGEGVGAVVTVQTMEEL
EMNIRIPVARLHCHACLLPFKPPTFKCEAGHVVCSTCRDGHGQACAHATIYTSCVELDDI
VRDAKVPCAYSEYGCTSWVVYHEVADHHRSCRCGPCFCPGSDCELFTSPARLAEHLGTHH
AWPVTKIAYGKPSKLAVPGPQGGQVLVGETDGCVFLVSAFAFGGATAVSLVCVRMSGDAA
AGVPQFRCKLWVEVDSNKENLVLVTSMVASSDLSGGFVAANQGMFLAVPPELLHDSSGEA
PILSVRIDRVTAAAAAAAAAARSPSATPPSRFTKRL
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagcagaggagggtttccacgccggagagcggccacggcggcaagaggccaagg
gagcaggccacgcccggcggcgggatcaagcaggagcggcgagggcaagagcaagtggag
gcgagccagggcggcgagggagtgggagcagtggtgaccgtgcaaaccatggaggagctg
gagatgaacatcaggatccccgtcgcacgtctccactgccacgcctgcctcctccccttc
aagccccccaccttcaagtgcgaggccgggcacgtcgtgtgttccacctgccgcgacggc
cacgggcaggcctgcgcccacgccaccatctacacctcctgcgtcgagcttgatgacatc
gtgcgcgacgccaaggtgccctgcgcctactcggagtacgggtgcacgagctgggtcgtc
tatcacgaggtggcggaccaccaccggtcctgccgctgcgggccctgcttctgcccgggc
agcgactgcgagctcttcacctcgccggcgaggctggccgagcacctgggcacccaccat
gcctggcccgtcaccaagatcgcctacgggaagccgagcaagctcgccgtcccggggccg
cagggcgggcaggtcctggtgggcgagaccgacgggtgcgtgttcctggtgtccgcgttc
gcgttcggcggggccacggccgtatcgctggtgtgcgtgaggatgagcggcgacgcggcc
gcgggggtgccccagttccgctgcaagctctgggtggaggtcgacagcaacaaggagaac
ctggtgctggtcacgtccatggtggccagcagcgacctgtccggcgggttcgtggcggcc
aaccagggcatgttcctggcggtgccgccggagctgctgcacgacagctccggcgaggcg
ccaatcctcagtgtccgcatcgacagggtcaccgcagctgctgccgctgccgctgccgct
gccaggtccccgtccgccactccgccgtcgaggttcaccaagaggctgtag
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