Panicum virgatum (switchgrass): 120676644
Help
Entry
120676644 CDS
T07260
Name
(RefSeq) probable indole-3-acetic acid-amido synthetase GH3.1
KO
K14487
auxin responsive GH3 gene family
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120676644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GH3
GH3_C
GH3_M
Motif
Other DBs
NCBI-GeneID:
120676644
NCBI-ProteinID:
XP_039813897
LinkDB
All DBs
Position
5N:59895835..59898260
Genome browser
AA seq
613 aa
AA seq
DB search
MPEAPTPKTTPPACGFAPGAHREALEFIEHVTANAGQVQRRVLAEILAQNAPAEYLRRHG
VSGTAGDAVEAFRRLVPLVTYEGLQPDILRIANGDTSPILSGKPISEFLTSSGTSGGERK
LMPTIADELDRRSLLYSLQMAVMSQSVPGLDKGKSMYLLFVKAESRTPAGLAARPVLTSY
YRSRQFLERPHDPYTDYTSPNEAILCVDSYQSMYAQLLCGLVHRADVLRVGAVFASGFLR
AIRFLEKHWPRLCRDIRAGALDPEITDRAVRDAVGRVLRADPALADEIEAECGRASWEGI
IRRLWPRTKYIDVIVTGAMSQYIPTLEFYGGGLPLACTMYASSECYFGLNLKPMCKPSDV
AYTLIPTMCYFEFLPLRCSNTKQAEPSHRDLVDLVDVKLGHEYELVVTTYSGLCRYRVGD
VLRVAGFKNEAPMFSFVRRQNVALSIDSDKTDETELHAAVSGAVQHLAPFGASLVEYTSY
ADAATIPGHYVLFWELRAGSTAVPASVFEDCCLAVEEALNSVYRQCRACDRSIGPLEIRV
VSEGTFDKLMDYAISRGASINQYKAPRCVRPGPVVELLDARVQGKYFSPKCPKWSPGNKL
WSNAREVITDGDA
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgccggaagcaccgacccccaagacaaccccgccggcctgcggcttcgcccccggtgcc
caccgcgaggcgctcgagttcatcgagcatgtcacggcgaacgccgggcaggtgcagcgg
cgcgtcctcgccgagatactggcgcagaacgcgccggccgagtacctgcgccggcacggc
gtctccgggaccgcgggcgacgccgtcgaagccttccgccgtctcgtcccgctcgtcacc
tacgagggcctccagccggacatactccgcattgccaacggcgatacctcgccgatcctc
tccggcaaacccatctccgagttcctcacaagctccggcacgtccggaggggagaggaag
ctgatgccgaccatcgccgacgagctggacaggaggtcgctgctgtatagcctgcagatg
gcggtgatgagccagtcggtgcccgggctcgacaagggcaagtccatgtacctgctgttc
gtgaaggcggagtcgcgcacgccggccgggctcgcggcccggccggtgctgacgagctac
taccggagccggcagttcctggagcggccgcatgacccctacaccgactacacgagcccc
aacgaggcgatcctgtgcgtggactcgtaccagagcatgtacgcgcagctgctgtgcggc
ctcgtccaccgcgccgacgtgctgcgcgtcggcgccgtgttcgcctcgggcttccttcgc
gccatccgcttcctcgagaagcactggccgcgcctgtgccgcgacatccgcgcgggcgcc
ctcgacccggagatcaccgaccgcgccgtgcgcgacgccgtcgggagggtgctgcgcgcc
gacccggcgctcgccgacgagatcgaggccgagtgcgggagggcgtcgtgggagggcatc
atccggcggctgtggccccgcaccaagtacatcgacgtgatcgtgaccggcgccatgtcg
cagtacatcccgacgctggagttctatggcggcggcctgccgctcgcgtgcaccatgtac
gcctcctccgagtgctacttcggcctcaacctcaagcccatgtgcaagccgagcgacgtc
gcctacacgctcatccccaccatgtgctacttcgagttccttccactccgctgcagcaac
acgaagcaggccgagccgagccaccgcgacctggtcgacctcgtcgatgtcaagcttgga
cacgagtacgagctcgtggtcaccacttactccggtttgtgtcggtatcgcgtgggcgat
gtgctgcgggtggcggggttcaagaacgaggcgccgatgttcagcttcgtccggcggcag
aacgtggcgctgagcatcgactccgacaagaccgacgagacggagctgcacgcggcggtg
agcggcgcggtgcagcacctggcgccgttcggcgcgtcgctggtggagtacaccagctac
gcggacgcggcaaccatcccgggccactacgtgctcttctgggagctgcgcgccggcagc
acggccgtgccggcgtccgtgttcgaggactgctgcctggcggtggaggaggccctgaac
agcgtgtaccggcagtgccgggcctgcgacaggtccatcggccccctcgagatacgcgtc
gtctccgagggcaccttcgacaagctcatggactacgccatcagccgcggcgcgtccatc
aaccagtacaaggcgccgcggtgcgtgcgccccggcccggtggtggagctgctcgacgcg
agggtgcagggcaagtacttcagccccaagtgccccaagtggagccccgggaacaagcta
tggagcaacgccagggaggtgatcaccgacggggacgcctga
DBGET
integrated database retrieval system
