Panicum virgatum (switchgrass): 120676726
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Entry
120676726 CDS
T07260
Name
(RefSeq) sister chromatid cohesion 1 protein 4-like
KO
K06670
cohesin complex subunit SCC1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120676726
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
120676726
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rad21_Rec8_N
Rad21_Rec8
CNDH2_N
Motif
Other DBs
NCBI-GeneID:
120676726
NCBI-ProteinID:
XP_039813987
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All DBs
Position
5N:complement(66994934..67004800)
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AA seq
1034 aa
AA seq
DB search
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSIIFPDVPIALRLSSHLM
LGVVRIYSRKVNYLFHDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFHLDDFE
LPEAAFQGDTDHHVSTKEQITLQDNPEKTGYSTSQFGLDERFGDGSSSHIGLDLEEELLL
NKDHSIHLESDDGIIIQARPSVPSTDMDIDDNQSKDETAERYNMDGGPSSQGKLSPLNDD
LGGNSIPNWTGYNVQTPDLNDMLLHNEGIAGPSASYYQPSPFPGDEPASPEFISAQAPAT
PGLMGETVPSRVHESPVLSPQRKASPSSNDETAKADTPAAPSNDVVGSEVNELGLAKPAQ
VESSVVVQDDDALMQQHISEDLPSQGQTSNLEAAGDKLISPDVAASGETVTVNATVVDVP
LAVNDSELCVDDSTEPSVLENPTQINEQLVDAQDFQHEVQAVQQEVASNDRPNELTSEFA
EPEKMLSAPDAEFNPANDLGQITAEKGTTESDGSNKIGSLTSRKRHLEDSLPALESETTE
RLSSRPRGKRTTDFVPDDDDLLASILVGRRTPGLTLGSTPLPPRASSLKRPRLVSKAGTL
KRKVQIDDAMVLHADTIRQQLINTEDIRRIRKKAPCTRSEIWMIENGSLEDDIFHEPIFS
CLSEELNNLHNRTYETIVHPAVQSMELQGQLDISETIAEDSNIVGTSGAATIDDQFHIPD
RIHSDAVPPNANDTDGATASFGLQVPPDNQVNGVSNDFVSDTVFQGLTEPLIDNEKEVAV
ADREHAQVDTLDNDRLQDVPCDLQRSTDAQGSTPDVVLDSSGKAYAQAADGMTQEFNHFV
HSDANLFENNEVPTSEITGVECNQDASGFLQPTEDEIAVSAMGDNSGFQENNMGSLMDLD
MVNDYGLKECNDFGSAIHGVDTDFLNYDDDGDFDDANNDEQNPDEFESLDNSGWSSRTRG
VARYLKTLFDEESGLGRKSVAVDHLVRGKTRKEASRMFFETLVLTTKDYISVDQPNPFDF
VNIKPGPKLLKSEF
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgttctactcgcagttcatcttggccaagaagggccctctcgggacaatatggattgcc
gcgcacttggagcggaagctgcgaaagaaccaggtcgcggacacggacatcggcgtctca
gtagattcgatcatattccctgacgtcccaattgcacttcggttatcaagtcatcttatg
ttaggcgtggttagaatctattcacggaaagtcaactacctcttccacgactgcagtgaa
gctttgctgaagataaagcaagctttcaggtccactgctgttgatctaccacctgaggag
tcaactgctccttatcattctataacactgcctgagacatttcatcttgatgattttgaa
ttgccagaagctgcgtttcaaggagacactgatcatcatgtgagcacaaaagaacagatc
actttgcaagacaacccagagaaaacagggtattcaacatcccagtttggcctagatgaa
agatttggtgatggcagttcttcgcatattggcttggacttggaggaggaattattgctg
aacaaggatcactcaattcatcttgagtctgatgatggcattatcattcaagctcgacca
tcggttccttctaccgatatggacattgatgataaccaaagtaaagacgaaacagctgaa
agatacaacatggatggtgggccttctagtcaaggaaagctaagtccactgaatgatgac
ctaggaggaaacagtattcctaactggactggttacaatgtacagacaccagacttgaat
gatatgctattgcataatgaaggtattgctggaccatcagcttcatactatcaacctagt
cccttcccgggtgatgaacctgcatcaccagagtttattagtgctcaggccccagctaca
cctggtttaatgggagagacggttccttccagagttcatgaaagtcctgttctgagtcca
cagagaaaagcttcaccgtcaagcaatgatgaaactgcaaaggcagacactcctgctgct
ccaagcaatgatgttgtgggttctgaggtgaatgaacttggattggcgaagcctgcgcaa
gttgagtcttctgttgttgtgcaggatgatgatgcattgatgcaacaacacataagtgag
gatttgccgtcccagggtcaaacatcaaacttggaagctgctggtgataagctgatcagt
cctgacgtagctgcatctggtgaaactgtgactgttaatgcaactgttgtagatgtacct
ttggctgtaaatgattctgagctatgtgttgatgattctactgagccatctgtgctggag
aacccaacacagattaatgagcaattggttgatgcgcaagattttcaacatgaagtccag
gcagtgcaacaagaagtggcatctaatgatagaccaaatgaactaacatcagaatttgct
gagcctgagaaaatgctgtcagctccagatgctgaattcaatcctgcaaatgacttgggg
cagataactgcagaaaaaggaacaactgaatctgatggaagtaacaaaataggcagtctg
actagcagaaaaagacacctggaagatagcttaccagctctagagagtgagactactgaa
aggttgtctagtcgaccacgtggtaaaagaacaaccgactttgttcctgatgatgatgat
ttactggcatctattttagttggtagaaggacccctggattgacgcttggttcaacacca
ctaccgccaagggcatcatctttgaaacgcccgaggttggtatcgaaggcgggtacactc
aagagaaaagtgcagatagatgacgccatggttctacatgctgatactatacgacaacaa
ctgatcaatactgaggatatacggcgcattcgtaagaaggctccatgtactcgttctgaa
atatggatgattgagaatggttctctggaagatgatatattccacgagcccatcttttcc
tgcctatctgaggagctaaacaacttacacaatcggacatatgagactattgtacaccct
gctgttcagagcatggaactacaaggtcaactagatatatctgaaactattgcagaagat
agcaacattgttgggacctctggtgctgctactattgatgaccaatttcacataccagat
agaattcattcagatgccgtgccgccaaatgcaaatgacacagatggcgcaacagcttct
tttggtttgcaagtgcctcctgacaaccaggttaacggtgtatctaatgattttgttagt
gacactgtgtttcaagggttaactgaacctttaattgataatgagaaagaagtggcagtt
gcagacagggagcatgctcaagttgatacactggataatgaccgtcttcaagatgttcca
tgtgatctgcagaggagtactgatgcacaaggttcgactccagatgtggttctagatagc
tctggcaaagcttatgctcaagcagcggatggcatgacacaggagtttaatcattttgtt
catagtgatgctaatctttttgagaacaatgaggtgccgacttctgagattactggggtg
gaatgtaatcaagatgcctctggttttcttcaaccaacagaggatgaaattgcagtgtct
gctatgggagataattctggcttccaagaaaacaacatgggttctcttatggatttggat
atggtgaatgactatggactaaaagagtgcaacgattttggaagtgcaattcatggtgtt
gatacagattttctgaactatgatgatgatggggactttgatgatgcaaataatgatgag
caaaatcctgatgaattcgagtctcttgacaacagtggttggtcatctcgaactaggggt
gttgcaagatatctgaagactttattcgatgaagaatctggtcttgggagaaagagtgtc
gccgttgaccaccttgtacgtggaaagactcggaaggaagcctcaagaatgttcttcgag
accttggtcctgacgacaaaggactacatcagcgtggatcaaccaaaccccttcgatttt
gtgaacataaagccgggaccaaagctcctgaagtcagaattctag
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