Panicum virgatum (switchgrass): 120676909
Help
Entry
120676909 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120676909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120676909
03009 Ribosome biogenesis [BR:
pvir03009
]
120676909
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120676909
Spliceosome [BR:
pvir03041
]
Complex A
U1 snRNP components
U1 related factors
120676909
Complex B
120676909
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Helicases
120676909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
120676909
NCBI-ProteinID:
XP_039814178
LinkDB
All DBs
Position
5N:6062032..6066860
Genome browser
AA seq
671 aa
AA seq
DB search
MASSASAPASKGPRYAPPDPTLPKPWRALIDGNTGYLYFWNPETKVTQYERPVAAASPSP
SQPPDYSRPEERARSSGPSELHSEAAVSRSQYAPSSDNRTRNDHSEPRFAAEANVSQSAP
FTNQFSQAGNGSQMSTEAYRAKHEISIVGNEAPAPFMTFQSTGFPSEILREVLQAGFSAP
TPIQAQSWPIALKGRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSREGPTVLVLSPTRE
LATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLRELDRGADVVVATPGRLNDILEMNRVS
LRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPSKRQTLMYTATWPKEVRKIASDLLVNPI
QVNIGNTDQLVANKSITQHVEVISHSEKSRRLDQILRSQEPGSKVIIFCSTKRMCDQLAR
NLSRQYGASAIHGDKSQAERDSVLSDFRSGRCPVLVATDVAARGLDIKDIRVVVNYDFPT
GVEDYVHRIGRTGRAGATGSAYTFFGDQDSKYASDLVKILEGADQSVPQQLKEMALRGGY
GGRSRRWASSDNSYGGQGYGAKRSTDSFNNSNFGNQAVGGSSFHSSFYNNTSGSQFGDTP
SFRGSYDNSSHNNQSGAASFPPSSGNNQSGDGLSFHERFYGPLGGDQSRTSNDGFRARSR
SPSKAVGVSNW
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtcggcgtctgcgccggcgtccaagggtccgcgctatgcgcccccggatccg
acgctgcccaagccgtggagggcgctcatcgacggcaacaccgggtacctctacttctgg
aacccggagaccaaggtcacccagtacgagcgccccgtcgcggctgcatccccctccccg
tcgcagccgcctgactactccaggcccgaggagagggcgaggagcagcggaccttccgag
ttgcactcggaagctgcggtgagccgctcgcagtatgcgccttcgtctgataacagaaca
aggaatgatcactcagagccacgctttgcagctgaagcgaatgtttcacagagtgctcct
ttcaccaatcaattttctcaagctggcaatggaagccaaatgtcgacagaagcatatcgt
gctaagcatgagattagtatcgttggtaacgaggcgccagcaccattcatgacatttcag
tcaacaggctttccgtcagagattctaagggaggttctgcaggcaggattctctgcacca
actcctatccaagctcagtcatggccaattgctctaaaaggtcgtgatattgtagctgtg
gcgaagacaggttctggaaaaacactgggatatctaattccagggtttattcttctgaag
cgtctacagcataattcaagggaaggtccaacagtattagttttgtctccaaccagggag
ttggcaacgcaaattcaagatgaagcaatcaagtttggcagatcttcaagaatatcttcc
acttgcttatatggaggtgccccgaaaggccctcagctaagagagttggatcgtggtgct
gatgttgttgttgcaactcctgggagattgaacgacattttggaaatgaatagagtgagc
ctgcgtcaagtatcatatcttgtccttgatgaagctgaccgtatgcttgatatgggattt
gagccacaaataagaaaaattgttaaacaaataccatctaaacggcaaactcttatgtac
actgcaacatggccaaaagaggtgagaaaaatagcgtcggatttactggttaacccaatt
caagttaacattgggaacacggatcagctggttgcaaataagtcaattacccagcatgtg
gaagttatctcacattcggagaaatcaagacgacttgatcagatcttgcgttcacaagag
cctgggtccaaggtcataatattttgctctaccaagaggatgtgtgatcagctggctcgg
aacctatcacggcagtatggtgcttctgctattcatggcgataaatcacaggctgagagg
gattctgtgttgagtgactttcgaagtggaaggtgtccagttcttgtagccactgatgtg
gccgctcgaggcttagacataaaggatatcagagtcgtggttaactatgacttcccaact
ggtgtggaggattatgtccatagaattgggaggacaggtagggctggtgcaacaggatct
gcctacacattcttcggtgaccaggactcaaagtatgcttcagaccttgtgaagattttg
gagggtgcagaccaatctgtgccacaacaattaaaagaaatggctcttcgtggaggatat
ggtggaagatcacgtcggtgggcatcttctgataactcttatggtggtcagggatatggt
gctaaaagatccactgacagcttcaataacagtaacttcggcaaccaggcggtgggcggt
tcaagctttcactcgagcttctataacaacacaagtggcagtcagtttggtgatactccg
agctttcgtggcagctatgataacagcagccacaataaccagagtggtgctgccagcttt
cctccaagctctggcaacaatcaatctggggatggtctcagttttcatgaaaggttctat
ggaccacttggaggggatcaaagcagaacaagcaatgatggattccgtgctaggagcagg
agtccaagcaaggctgtgggagtttccaactggtaa
DBGET
integrated database retrieval system
