Panicum virgatum (switchgrass): 120676942
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Entry
120676942 CDS
T07260
Name
(RefSeq) serine/arginine-rich splicing factor SR30-like isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120676942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120676942
Spliceosome [BR:
pvir03041
]
Common components
Common spliceosomal components
SR proteins
120676942
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_3
DUF4299
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
120676942
NCBI-ProteinID:
XP_039814222
LinkDB
All DBs
Position
5N:19272889..19278231
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AA seq
264 aa
AA seq
DB search
MKTMSRRNSRTIYVGNLPGDIREREVEDLFHKYGRILDIDLKIPPRPPGYAFVEFEDPRD
ADDAIYGRDGYNFDGYRLRVELAHGGRGQSYSYDRSSSYSSTRRGGVSRRSDYRVMVMGL
PSSASWQDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYEDMKYAIRKLDDSLFRNAFS
RAYVRVREYDARSRSRSRSRSYSRSPSYSRSRSPKSVSRSLSPVDERSLSRSRSSVSSPS
RGRSASRSPRSRSASRSRSPVRSD
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaatgagcaggcgcaacagccgcaccatctatgtaggcaacctccctggggac
atccgtgagagggaggttgaggacctcttccacaagtatggtcgaattttggatattgac
ctgaagatacctccaagacctcctggatacgctttcgttgagtttgaggacccacgtgac
gctgatgatgcaatttatgggcgtgatgggtataactttgatggctacaggttgcgggtt
gaattagctcatggtggaagaggtcagtcttactcttatgatcgttctagcagctatagc
agcacacgccgtggaggtgtttctaggcgctctgattaccgtgttatggtcatggggtta
ccttcatcggcatcatggcaagatctgaaggaccacatgcgacgcgccggtgatgtttgt
ttctctgatgtataccgtgaggccggagaaactattggaattgtggattatacaaactat
gaagacatgaaatatgcgatcaggaagcttgatgactcactgttcaggaacgcattttct
agggcgtatgtcagagtgagagagtatgatgctagatcacgaagcagaagccgtagccgc
tcttactcgagaagccccagttacagcaggagcaggagtccaaaatctgtttctcggtca
ctatcacctgtcgatgaaagatcgctatcaagatcccgatcctctgtctcttctccttct
cgtggaagatctgcgagcagaagccccaggagcagaagtgcatcccgttctcgttctcct
gtgagatctgattga
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