Panicum virgatum (switchgrass): 120677345
Help
Entry
120677345 CDS
T07260
Name
(RefSeq) KH domain-containing protein At4g18375-like
KO
K21444
poly(rC)-binding protein 3/4
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120677345
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
120677345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_2
KH_KhpA-B
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
120677345
NCBI-ProteinID:
XP_039814430
LinkDB
All DBs
Position
6N:15466324..15469828
Genome browser
AA seq
672 aa
AA seq
DB search
MSGMRTPGAWKDCPLRVKEKNKMHVSSASGSMTTNGVVQTPSWLSSNMHREYDYKMHREY
EREERNDQHKRPFPHAQESSNNDGLVLYRILCPDSLIGSVIGKNGNVINAIRQQTSAKVK
AIDPYPGADKRVILVYCYVKHRDLDADSDDNEPVCAAQDPLLRVHKAIVDRLQKNHRDSD
KKNTEEANILVPASQASNVIGKSGAVIKHLRSTSRAFIKVSPKDPSDAKHSCAMSFDNFV
QITGGAEAVKKALFGVSTIIYKHPSKENIPLETSIPEPAPSIIIPSELPVYPASNFYSAP
DAAIPHPSLSILGSTRHVPELALPADDHGRLPIYPSILPVIPTYSAPKCSGELEFRVLCP
GGKIGLVIGRGGATIKNIRQESGARIDVDDAKNDREESIITITSTEATDDVKSAAVEAVL
LLQAKINDYEDDRMNLHLLVPNKVIGCLIGRGGSIVNDMRKKTKANILISKGEKPWRASS
SDELVEVSGEADKLRDALVQIILRLREDVLKESVESQNSDRDGKLTVATFDSLYGGSLSL
PALLPHNPQIAPLSYDRRGESERALEVFPRTSSYGYSSMQVTDDGYGGLPSYTSKAYEEH
LPRVEMTVPASSLSKVMGKRGTNLDNIRKISGAHIEIIESKSSRHDHIAYISRTSDQRQS
AENLIKAFIMST
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaatgcggacacctggagcatggaaagattgccctctcagggtcaaggagaag
aacaaaatgcacgtgtcttcagcgtcgggatcaatgactaccaatggagttgtgcaaaca
ccatcctggctaagttctaatatgcacagggaatatgactacaaaatgcacagggaatat
gaaagagaagaaaggaacgaccaacacaagaggccatttccccatgctcaggaaagttct
aataatgatggactggttctttaccgtatactctgtccagacagtttgattggtagtgtc
ataggaaagaatggcaatgtgataaatgctatccggcaacagacaagtgccaaagtcaag
gctattgacccgtaccctggtgccgacaaaagggttatcttggtatactgctacgtcaag
catagagaccttgatgctgacagtgatgacaatgagcctgtttgtgcagctcaagatcca
ttacttagggtgcacaaagcaattgttgatagattacaaaagaatcatagagactctgat
aagaagaatacagaggaagctaacattcttgtgccagctagtcaggcgtcaaatgttata
ggaaaatctggtgctgtcatcaagcatcttcggtcaacatcaagagcattcattaaagtg
agcccaaaagatccaagtgatgctaaacattcatgtgctatgagttttgataattttgtt
cagataactggtggtgctgaagctgttaaaaaagcactgtttggagtatctaccatcatc
tacaagcacccatcaaaagagaacattcctcttgaaacttccattcctgaacctgctcca
agcattataatcccttcagaacttcctgtctatccagctagtaacttttactcagcccca
gatgctgctataccacatccaagcctgtctatcttagggtcaacacgtcatgttcctgaa
cttgctctacctgccgatgatcatggtcgactgcctatttatccatctattcttccagtt
attcctacttatagtgccccaaaatgttcaggagaacttgaatttcgtgttttatgccct
ggtggcaaaattggcttggttattggtagaggtggggctaccataaagaatataaggcaa
gaaagtggtgcaaggatagatgttgatgatgcaaaaaatgacagggaggaaagtattatt
accattacatccactgaggccaccgatgatgttaagtctgctgctgtggaagctgttttg
ctgcttcaagccaagatcaatgattatgaggatgatagaatgaatcttcaccttcttgtc
ccaaataaggttataggctgtcttattggcagaggtggttcaatagtcaatgacatgagg
aagaagactaaggcaaacatcctcatttcaaagggtgagaagccctggagagcatcttcc
agtgacgaacttgttgaggtatctggagaagcagacaagctgcgtgatgctcttgttcag
ataattttaagacttagggaagatgttctcaaagagagtgttgaaagccaaaattctgac
agggatggcaagctaaccgttgccacctttgattccttatatggaggcagtctttctttg
cctgcattattacctcataacccacaaattgcccccttgagctatgatagaagaggtgaa
tccgagagagctctggaagttttccctcgtactagttcgtatgggtatagctccatgcag
gtcactgatgatggctatggaggacttccatcatatacatcaaaggcatatgaagaacat
ctacctcgtgtggaaatgactgtccctgctagtagcctatcaaaagtaatgggaaagcgt
ggcacaaatttggacaacattagaaagatttctggagctcacattgaaattattgaatca
aaatcctctcgtcatgaccatattgcttacatatctagaacctctgatcagaggcaatca
gctgagaatttgattaaagctttcataatgtctacctaa
DBGET
integrated database retrieval system
