Panicum virgatum (switchgrass): 120677360
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Entry
120677360 CDS
T07260
Name
(RefSeq) YTH domain-containing protein ECT2-like
KO
K20102
YTH domain-containing family protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120677360
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120677360
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Gene cluster
GFIT
Motif
Pfam:
YTH
DUF3942
Motif
Other DBs
NCBI-GeneID:
120677360
NCBI-ProteinID:
XP_039814443
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Position
6N:complement(52118661..52124205)
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AA seq
611 aa
AA seq
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MDKQEPIADVEQKIGLTEKPKEQPVPSKDEKATLPPISVDSNVINIPCEGQTQAGTSNID
GDHNTAYPHNFYASQAQPFYYQGSGYENSPQEWDTYPPYMSVEGLEVGPTVVYNEDPSLM
FHGGYGYDPYAHYSPITTPVPTAVSGDGQLYSPQQFSFSAPYYQQSVPPGMPYLSSPTPI
SQGETMMPIDPTQGGFIADTHTLSPNSFLFGSRPEWFRSSEGTGSFPSPAASPQPAGGVS
GAFGQSNFPMASGMPSSHQKPFYGFGSPADSYGRGFSHGGMFPQASNCGGSFPGFGVNGR
SSIYIEKGRRRGRGNALICSYYGPVDFLNEQSRGPRATKPKKQPEGDSKDEKPSTGVGRE
LYNRPDFVTEYTNARFFIIKSYSEDNVHKSVKYGVWASTTNGNKKLDSAYCEAKEKEEHC
PIFLLFSVNASAQFCGVAEMIGPVDFEKSVDYWQQDKWTGQFPVKWHIVKDVPNNLFRHI
ILENNDNKPVTNSRDTQEVKLEQGLEMLKIFKNHDDGASILDDFDFYEEREKVLQENKAR
LHQQHISTSIAVEPKKPLTVPTDLVGHITKSFAQAVRLGESKTVSPSSEKASGVDPSISA
KPVEIKQSGLS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggacaagcaggagccaatagctgatgtcgaacaaaagattggtctcactgagaagcct
aaagagcagcctgttcccagtaaggatgagaaagcaactttgcccccaatttcagttgat
tcaaatgttatcaatataccatgtgaaggccaaacccaagctggcacgtccaacatagat
ggggaccataatactgcatatccacacaacttttatgcttctcaggcgcagccattctat
taccaaggctcaggatatgaaaactctccacaagaatgggacacatatcctccttacatg
agtgtcgaaggattggaagtgggtccaacagttgtgtacaatgaggacccttcattgatg
ttccatggtggctatggatatgacccatatgctcattattctcctattacaacacctgta
ccgactgctgttagtggagatggtcagctctactcccctcagcagttctccttctcggct
ccttactaccagcagtcagtaccacctggcatgccatatttaagctctcctactccaata
tcacagggtgagacaatgatgccgattgacccaacacaaggaggttttattgctgatact
catactctgagtccgaacagcttcctttttggctcaagacctgaatggttcagatcttca
gaaggaactggctcatttccatcacctgcagcttcacctcaacctgctggtggtgtttca
ggagcctttggccaaagcaactttccaatggcttcaggaatgccatcatctcaccagaag
cccttttacggtttcggatccccagctgactcctacggacggggtttctctcatggtggg
atgttcccacaggccagtaattgtgggggatccttccctggctttggcgttaatggtaga
agttccatctacatcgagaaagggcgcagaagaggaaggggtaatgcccttatttgcagc
tactatggcccggtcgactttctcaatgagcagagtcggggtccgcgcgctactaagcct
aagaagcaaccagagggtgacagtaaggatgagaagccttctacaggagttggtcgtgag
ttgtacaataggcctgactttgttacagagtacacaaatgccagatttttcatcataaag
tcgtacagtgaagataatgtgcacaagagtgtcaaatatggtgtttgggctagcaccaca
aatggaaacaagaaactggactcagcttattgtgaagctaaggagaaggaagagcactgc
cccatttttctgttgttttcggtgaatgctagtgcacaattctgtggtgttgctgagatg
atcggtccagtggactttgagaagagtgtggattactggcagcaagataagtggactggt
cagtttcctgttaagtggcacatagtgaaggatgtccccaataatctcttccgccatata
attcttgaaaacaatgacaataaacctgtaacgaatagccgagacacacaggaggtgaaa
ctagagcaaggactggagatgctgaagatctttaagaaccatgatgatggtgcgtcaatc
cttgatgattttgacttttatgaggagcgtgagaaagtgctgcaggaaaataaggcacgg
ctgcatcagcaacatatatccacttctattgctgttgaacccaagaagcccttgactgtg
cctactgaccttgtggggcatatcaccaagagttttgctcaggctgtgcggcttggtgag
tccaagaccgtaagcccttcgtctgagaaagcatctggggttgatccgtctatttctgca
aagccagtcgaaattaagcagagtggtttgtcatag
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