KEGG   Panicum virgatum (switchgrass): 120677416
Entry
120677416         CDS       T07260                                 
Name
(RefSeq) serine/arginine-rich splicing factor SR45a-like isoform X1
  KO
K12897  transformer-2 protein
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120677416
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pvir01009]
    120677416
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120677416
Protein phosphatases and associated proteins [BR:pvir01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     120677416
Spliceosome [BR:pvir03041]
 Common components
  Common spliceosomal components
   SR proteins
    120677416
SSDB
Motif
Pfam: RRM_1
Other DBs
NCBI-GeneID: 120677416
NCBI-ProteinID: XP_039814508
LinkDB
Position
6N:33366070..33371459
AA seq 363 aa
MAARSTPQTSGCLAQAIFRSDRRLIHLPCSSSQTATALAPPPSRQGRRRRLPLQAPRPPF
VGSPILRPALRFTVSFVKMSQTKEVRYTARSITPPADRNGTSSSPPPKRRSPSRSPPPKS
NSRSPRPRSPKRRSTSRSPPPRRRGRSRSRSRDRSRSRSEDDRNPGNNLYVTGLSARVTE
DDLEKFFSKEGKVKNCHVVLDPRTKESRGFAFVTMDTVEDARRCIKYLHRTVLEGRLVTV
EKAKRTRERTPTPGKYCGRRGGSQRRSRSPSPYRSRRRERSRSRDRKRERSRSRDRRERS
RSRDRRRDRSRSRDRRDRSRSRDRRRDRSRSRDRRRERSRSRDSRRRGDRSRSPVGNGNH
KAD
NT seq 1092 nt   +upstreamnt  +downstreamnt
atggcggcccgttcaacgccgcaaacaagcggctgcctcgcccaggcgatttttcgttcc
gaccggcggctcatccatctcccgtgctcctcctcgcagacggcgacagcgctcgctccg
cctccctctcgccaggggcggcgacggcggctgcctctccaagcccccagaccaccattt
gttggttcccccattcttcgccctgcactccggttcacagtttcatttgtcaagatgtca
caaacgaaggaagtgagatacactgcacggtctattacacctcctgcagatagaaatgga
acttcaagctcgcctcctccaaagagacgcagcccttcaaggtcgcctcctccaaagagt
aactcaaggtctccacgtccaagaagtcctaagcgacggagcacctcaaggtcacctcct
cctaggagacgtggtagatcgaggtccaggtcaagggataggagtcgatccaggagcgaa
gatgatagaaatccagggaataacctttatgtgactggattgtctgctcgtgtaactgaa
gatgatcttgagaagttttttagtaaagaaggaaaggttaaaaactgtcatgttgttctt
gatcctcgcacaaaagaatcccgtggctttgcctttgtgaccatggatactgttgaagat
gcaagacgctgcatcaagtacctgcaccgcactgtacttgaaggtcgtctggtcactgta
gagaaggctaaaaggactcgagaaaggacccctactcctggaaaatactgtggtcgaaga
ggaggttctcaaaggcgctctaggagcccatcaccataccgttctcgcagacgggagcga
tcccgttcgagggaccgtaaaagggagcggtctcgctcaagggatcggagggagcggtct
cgctcaagggatcgccgaagggataggtctcgctcaagggaccgaagggaccggtctcgc
tcaagggaccgccgaagggaccggtctcgctcaagggatcgcaggagggagcgctcacgc
tcaagggactcaagaaggcgtggagatcgatccaggtcaccggttggcaatgggaaccat
aaggcagactag

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