KEGG   Panicum virgatum (switchgrass): 120677679
Entry
120677679         CDS       T07260                                 
Name
(RefSeq) THO complex subunit 6-like
  KO
K13175  THO complex subunit 6
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    120677679
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120677679
   03041 Spliceosome [BR:pvir03041]
    120677679
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     120677679
Spliceosome [BR:pvir03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    120677679
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 EIF3I WDR55 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_DCAF4 NBCH_WD40 Beta-prop_Nup120_160 Hira Beta-prop_RIG_2nd Beta-prop_SPT8 Dit-like_CBM2 v110
Other DBs
NCBI-GeneID: 120677679
NCBI-ProteinID: XP_039814789
LinkDB
Position
2K:complement(41795274..41799233)
AA seq 381 aa
MATAAAQALPASMDARGWDEASYRRGILRARDFSSRTLFRAVFFDHSDDSDSDVLLAAAS
SDGSLASFSLSSCISAASASSQAEAAVTLVDPVCIVQAHSGPAYDVRFYPDPQQPLLFSC
GDDGRIRGWRWHEMQSCLVPLSLQGDHLEPALDLVNPQHEGPWGARSPIPENNAIAINKQ
DGSIFAAAGDACAYCWDVETGKCKMTFKGHTDYLHSVAIRESNRQVVTGSEDGTARIWDC
RSGKCTQVVHPVKKKAFESSWVSCVAIDASESWLACGTSSGISVWSLLSNECIFNLDCHA
PVQDLLFDKNQILAVGAEPVLSRFTINGTILSQIECAPQSAFSISNHSSGMAAVAGYGGL
VDVISELGSHLCTFSSRGLDK
NT seq 1146 nt   +upstreamnt  +downstreamnt
atggcgacggcggcggcgcaggcgctcccggcatcgatggacgcgcgcgggtgggacgag
gcatcgtaccgccgtggcatcctacgtgctcgcgacttctcgtcgcgcaccctcttccgc
gctgtcttcttcgaccacagcgacgactcggactccgacgtcctactcgccgccgcctcc
agcgatggctccctcgcctccttctccctttcatcctgcatatccgccgcttccgcctcc
tcccaggcggaggccgccgtcacgctggttgatcccgtctgcatcgtgcaggcgcacagc
ggccctgcctacgatgtcaggttctatcccgatccgcagcaaccgctgctcttcagctgt
ggggatgacggacgcatccgtggctggagatggcacgagatgcagagctgccttgtcccg
ctatccctgcaaggagatcatctagaaccagcacttgacttagtcaaccctcagcatgag
ggtccttggggtgctcgctctccaatacctgaaaacaatgccattgcaatcaataaacag
gatggatccattttcgcagcagcgggtgatgcttgtgcttactgctgggatgtggagact
ggtaaatgtaaaatgacattcaaggggcatactgactatttgcacagtgttgcaattcgt
gagtcaaaccgccaggtggtaacaggatcagaggatggaacagcccgtatctgggattgc
agaagtgggaagtgtactcaagttgtacatccagtaaagaagaaagcatttgaaagctca
tgggtcagttgtgttgccattgatgcaagtgaaagttggctggcttgtggcacgtctagt
ggtatatcagtttggagtcttctctcaaatgagtgcatctttaatttggattgccatgcc
cctgttcaagacttgctgtttgataagaaccaaattttggcagttggtgctgaacctgtg
ctctcccgtttcacaataaatgggaccattctatcacaaatagaatgtgctcctcagtcg
gcattctccatctccaaccattcatctgggatggcagctgttgctggatacggaggcctg
gtggatgtgatctcggaacttgggagccatctgtgcacattcagtagcaggggccttgac
aagtaa

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