KEGG   Panicum virgatum (switchgrass): 120677733
Entry
120677733         CDS       T07260                                 
Name
(RefSeq) signal recognition particle 54 kDa protein, chloroplastic-like isoform X1
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03060  Protein export
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    120677733
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pvir02044]
    120677733
Enzymes [BR:pvir01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     120677733
Secretion system [BR:pvir02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   120677733
  Eukaryotic Sec-SRP protein
   120677733
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N AAA_22 Zeta_toxin CbiA ParA CLP1_P ArsA_ATPase nSTAND3 NTPase_1 APS_kinase MeaB AAA_30 cobW AAA_18 6PF2K AAA_33 AAA_17 AAA_16 MMR_HSR1 AAA_31 ResIII NPHP3_N ATPase ATP_bind_1 AAA Thymidylate_kin AAA_25 KAP_NTPase AAA_19 KTI12 GET2
Other DBs
NCBI-GeneID: 120677733
NCBI-ProteinID: XP_039814847
LinkDB
Position
6N:complement(43472231..43482890)
AA seq 584 aa
MSFAQSLSSLHPSSPRARRSPLSSSDLYPMEATSTLALSSSPAAARRSQEKSAVASLHLR
RFLTTSSLHLRAVQSPALRAHSSAFQGWRRRRRAGGLVVRAEMFGQLTTGLESAWNKLRG
VDVLTKENIAEPMRDIRRALLEADVSLPVVRRFIESVSEKAVGTDVIRGVSPDQQLVKVV
NDELVQLMGGEVSDLSFAKSGPTVILLAGLQGVGKTTVCAKLALYLKKMGKSCMLVAADV
YRPAAIDQLNILGKKVGVPVYSEGTDAKPSQIAKNGLKEGKSQKKDVIIVDTAGRLQVDK
AMMNELKEVKKAVNPTEVLLVVDAMTGQEAAGLVSSFNDEIGITGAILTKLDGDSRGGAA
LSVKEVSGKPIKFVGQGERIEDLEPFYPDRMAQRILGMGDVLSFVEKAQEVMRQEDAEEL
QKKILSAKFNFNDFLKQTQMIAKMGSFSRLIGMIPGMNKVTPAQIREAEKNLKFMESMIN
VMTPEERERPELLAESRERRRRVAKDSGKTEQQVSQLVAQLFQMRARMQKMMGAMQGKES
PYMDELMESIKAEEQGAADTGRHRRKYGNLRQRQLDAMRGFRRR
NT seq 1755 nt   +upstreamnt  +downstreamnt
atgtccttcgctcagtctctctcgagtctccatccctcttccccgcgcgcgcgccgctcc
cctctctcctcatcagacctttatccaatggaggccaccagcacactcgcgctctcctcg
tcccccgccgccgcgcgacgctcgcaggagaagtcagccgtcgcctccctccacctccgc
cgcttcctcacgacctcctcactccacctccgcgcggtccaaagtccagcacttcgcgct
cactcttcagccttccagggatggaggaggcggaggagggcgggcgggctggtagtccgg
gcggagatgttcgggcagctaactaccggcctcgagtctgcctggaacaagctgcgggga
gtcgatgtattgacaaaggaaaacatcgccgagccaatgcgggatattagaagagcactt
ttggaggcagatgtaagcttgccggtagtaaggagatttattgaatctgtaagtgaaaag
gctgtagggaccgatgttatccgaggtgtcagtcctgatcaacagctggtgaaggttgtt
aatgatgaacttgtacaactgatgggcggtgaggtatcagatttgtcatttgcaaagtct
ggcccaactgttatcttgttagcaggtctgcaaggtgttgggaagactactgtttgtgca
aagcttgccttgtatctaaaaaaaatggggaagagttgtatgctggttgctgcagatgtt
tataggcctgctgccattgatcaactcaatattctgggtaaaaaggttggtgtaccagtt
tactcagagggaactgatgccaagccttctcaaatagccaaaaatggtttgaaggaagga
aaaagccagaagaaggatgtgattatagtggatactgctggaagactgcaggtagacaaa
gcaatgatgaatgagttgaaagaagtaaaaaaggctgtgaatcctacagaagttctgctt
gtggttgatgccatgactggccaagaagctgcaggattggtcagctccttcaatgatgag
attggtataactggtgctatacttacaaaactggatggtgactccagaggtggagcagca
ctaagtgttaaagaggtgtcaggaaagcccatcaagttcgtagggcaaggagaacgcatt
gaagatcttgagcctttctatccagatcgtatggcacagcgtatcctgggaatgggagat
gtactctcatttgttgaaaaagcacaagaagtgatgcgccaagaagatgcagaggaatta
cagaagaagattttgagtgcaaaatttaacttcaatgactttctgaagcaaacacaaatg
atcgcaaaaatgggttcgttcagtcgtttaattggcatgattccaggcatgaacaaggtt
accccagcacaaattcgtgaagctgagaagaatctcaagtttatggaatcaatgatcaat
gtgatgactcctgaggaaagggaaagaccagaattactggctgaatcacgtgagagaagg
agaagagtggccaaggactctggaaagactgaacagcaggtgagccaattggttgcgcag
ctcttccaaatgcgtgcccgaatgcaaaaaatgatgggtgccatgcaaggaaaagaatct
ccctacatggacgaactcatggagtcaattaaggctgaggagcagggtgctgctgatact
ggaaggcacaggaggaagtatggcaacctgaggcagcggcaactggatgcgatgcgtggt
ttccgccgacgttga

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