Panicum virgatum (switchgrass): 120677780
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Entry
120677780 CDS
T07260
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120677780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120677780
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120677780
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120677780
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120677780
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
120677780
NCBI-ProteinID:
XP_039814908
LinkDB
All DBs
Position
6N:10009316..10017822
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AA seq
955 aa
AA seq
DB search
MAGPPAAGQVVERFRARLREEAGGEPGAAAVVRAYAEALRELTFNCKPVITELTIIAGQH
AALAARGIADAVCARVAEVPPDQILPSLYLIDSIVKNIGREYVDHFAARLQNVFVDAYCR
VHPSQYASMQRLFRTWWPVFPSPVLRGIEDDLQFSPSEDKRPAIATNPHQSESLSPRPSH
GIHVNPKYLEAQQKLKQANVQAHQPAVRGTRQMADLDEDLMNGLTSNGLRGRPSSMLQYA
GDPDQQDTFQSIAGIRATSPHLLSTHPSDVILDGPLATSRRNLSKSPPLDVFPRNMSPKR
APERLPPSHSVLGPDPRRLPDRNGRSRWTFDDGAQRPTISMIDEEYRKQSARELIDAYGN
CQGRDADERVPKMQRLDSNGMASKSTARNWLTSEEEEYSWEDMSPTLTDRVRSSMPSFTP
GTMRAGFPGANAGLLESDTGRHNFPSQSHQSLIDGPPLNLEDRITSANHVDMSTSRRYPS
NYGIQNGAHLEYQTSEHTRNHGRTATMQTPPWQQPSGLPLRIQAPEHPSVLDRIPLPADG
EMPVKRLEIGGAYNALGVDIPLVEKRRPLTAPTPIEWPPLHHTQSQTLLPIPPDTKHVRN
AADSLEIRPFVSQGASSSVFVPRHHYDALDRKTLSTGSLAQPPYQHQDLLPSSQQNQGMG
NQAQPHHPQQFHPHPNPHHQEAFRSFAPGISVSQFSGQGGTAAMPPVSLLPSSFSVPPDV
PPYGMPSVPSFPRPPLPSGPPPASLQIGSSSSQVGGAQPFVSGLLSNLMRQGVITLETPG
RPQDSIGVDFNVDLKVRNEPVINALYRDLSRQCKTCGLRFKCQEEHRAHMDWHVTKNRNS
KNRKQSSRKYFVTAEEWLRAAETVGNDGVPAFIPSEPVPDIKEEKEIAVPADEEQTACAL
CQEPFEDFYSDDTEEWMYKGAVYMNAPDGNIDGLERSQLGPIVHAKCRSAPSNTS
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcccccccgcggcgggccaggtcgtggagcggttccgcgcgcggctgcgcgag
gaggcgggcggcgagccgggcgccgccgcggtggttcgcgcgtacgcggaggcgctccgg
gagctcaccttcaactgcaagccggtcatcaccgagctcaccatcatcgcggggcagcac
gccgcgctcgccgccaggggcatcgccgacgccgtctgcgcccgcgtcgcggaggtgcca
cctgaccagatactaccatctttgtatctgatagatagtattgtgaagaacataggacgg
gaatatgtcgaccattttgctgctaggttgcagaatgtatttgttgatgcatactgcaga
gttcatcccagtcagtatgcttcaatgcagcgcctttttcgtacatggtggccagtgttt
ccttctcctgtgcttcgtggcattgaggatgaccttcaattttctccctcagaggataag
cgtcctgccatagcgacaaatccgcatcaatcagaatcgctatctcctaggccatcacat
ggcatacatgtaaatcccaagtacctggaagcacaacaaaaattgaagcaggccaatgtg
caggcgcatcaaccagcagttcgtggcacaaggcaaatggctgatctggatgaggatctg
atgaatggattaacatctaatggtttgcgaggacgtccgtcttcaatgcttcagtatgct
ggtgatcctgatcaacaagatacatttcaatctattgctggaataagggcaacatcacca
catctgttgagcacacatccatctgatgtcattctagatgggccattagccacttcaagg
agaaacttgtcgaagtcgccacctcttgatgtgttccctaggaatatgtctcccaagaga
gcgccagagaggctgccaccatctcattctgtattgggacctgaccctagaaggttgcct
gatcggaatggcaggtcgagatggacttttgacgatggtgcacagcggccaacaatcagc
atgattgatgaagagtacaggaagcaaagtgcaagagaacttattgatgcttatgggaat
tgtcaaggccgagatgctgatgaaagagttcctaaaatgcagcgcctggattcaaatggg
atggctagcaaatctactgcaagaaattggctcacttcagaggaagaagagtattcttgg
gaggatatgagtccaactttgactgaccgagtcagaagcagcatgccatcttttactcct
ggaaccatgagagctggatttcctggagcaaatgcagggttactggaatctgatactggg
aggcacaattttccaagccaatctcatcaatcattgattgatggaccaccattaaatctc
gaagataggattacttctgcaaatcatgttgacatgtctactagtaggagatatccaagc
aattatggtattcagaatggagctcatttggagtaccagacttctgagcatacccgcaat
cacggtagaactgctaccatgcaaactccaccttggcaacagccttctggtctgccattg
cgaatacaagcacctgaacatccatcagtgcttgatagaataccactgcctgctgatggt
gaaatgccagttaagagattggagattggtggtgcatacaatgctttgggtgtagatata
cccttggtggagaagcgcaggccgctaactgctcctactccaatagaatggcctcctctt
catcacactcagtcgcaaactttactacctattccacctgatacaaaacatgttagaaat
gcagcagatagtctagaaattaggccttttgttagtcaaggagccagttcatctgtattt
gttccacggcatcattatgatgccttagatcggaaaacattaagtactggtagcttagct
caaccaccataccagcaccaagatttgctgccatcgagtcaacaaaatcaaggtatggga
aaccaagctcagcctcatcatcctcaacaattccatccccatcccaatcctcaccatcag
gaggcttttagaagctttgcccctggcatatctgtgtcccagttctcagggcaaggtggt
actgcagcgatgccaccagtttcacttctgcccagttccttttctgtaccacctgatgtg
ccaccctatggcatgccgtctgtgcccagttttcctaggccaccattaccttccggacca
ccacctgcttcactgcagatcggttcatcatcatctcaagttggcggcgctcaaccattt
gtctctggactgttgagtaaccttatgcggcaaggtgtaattacattggaaacacctggg
cgacctcaggattcaatcggagttgacttcaatgtagacctcaaggtacggaacgagcct
gtcatcaatgctttgtatcgggatctttcaaggcagtgcaaaacttgtggccttcggttc
aaatgccaagaggagcatcgtgctcacatggactggcatgttacaaaaaatagaaattcc
aagaaccgtaagcagtcttcacgtaaatattttgtcacggcagaggaatggttaagagca
gcagaaacagttggaaacgacggtgtccctgcttttataccctcagagccagtcccagac
ataaaggaagagaaagaaattgctgttcctgcggatgaggagcaaacagcctgtgcatta
tgtcaagaaccatttgaagatttctacagtgatgatactgaagagtggatgtacaaaggt
gcagtttacatgaatgcaccagatggtaatattgatggtctggaaaggtcacagttggga
cctattgtccatgctaaatgtcgatctgcgcccagcaatacttcttag
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