Panicum virgatum (switchgrass): 120677783
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Entry
120677783 CDS
T07260
Name
(RefSeq) 5'-3' exoribonuclease 3-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03008
Ribosome biogenesis in eukaryotes
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120677783
09123 Folding, sorting and degradation
03018 RNA degradation
120677783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120677783
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120677783
03009 Ribosome biogenesis [BR:
pvir03009
]
120677783
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120677783
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120677783
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
120677783
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
RNases
120677783
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
120677783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
120677783
NCBI-ProteinID:
XP_039814912
LinkDB
All DBs
Position
6N:10074713..10082219
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AA seq
1061 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVVVDVVEEEPVEIEGVRVPVDTSKPNPNGLEFDNLYLDMNGIIH
PCFHPEDRPSPTTFAEVFQCMFDYIDRLFVMVRPRKLMYMAIDGVAPRAKMNQQRSRRFR
AAKDASDAAAEEERLREEFEREGRKLPAKQQSQTCDSNVITPGTEFMAVLSVALQYYIHC
RLNYDPGWKQIKVILSDANVPGEGEHKIMSYIRGQRNLPGFNPNTRHCLYGLDADLIMLA
LATHEVHFSILREVVYTPGQQDKCFLCGQVGHLAANCEGKAKRKAGEYDEKGEPIVPKKP
YQFLNIWTLREYLEYEFRMPNPPFKIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAI
NLLMAVYKKEFPSMGGYLTDSCTPDLNRVEHFIQAVGSYEDKIFQKRARLHQRQAERIKR
EKAQAKRGDDLDPHVRDDLIVPVANFRGSRLASGAVPSPYEHNGAHRERNSQPRKAARVS
SSGSSIAAAIVEAENDLEAQERENKEDLKSRLKDAIREKSDVFNSENPEEDKVKLGEPGW
RDRYYEEKFGARTSDQMEEIRRDVALKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASD
LRNLSELNITFQLGSPFKPFDQLMGVFPAASAHALPLQYRQLMTDPNSPIIDFYPTDFEV
DMNGKRFSWQGIAKLPFIDEDRLLAEIKKVENTLTPEEARRNSTMCNMLFVNGSHPLSPY
IYSLNSKFGNMPDKDCVEIKEKLDPSPSGGMNGYIALCAGDPSPPVFRSPVDGLEDIMDN
QVICSVYKLPDPHKHIARPPAGVIIPKKSVEAGDLKPPPVLWHEDSGRRPHDNNNRRPYD
NNNRRPHDNNRQNPAGALSGRQLGEAAHRLVVNSLNVRGGGQHNAPSMPYQTIMNGTNYS
NGRHHMGNQGVPPRMEQPAGHSGWHVPSDNMTNGQAAYGHQHERAGPSRHERDNRGRQHY
HPYARDNHHDSRGRVPPPPGYHQNHGNSHAAAPSAGPGWYGQPPPAYAGGYQPAPYGAQQ
WQQRPYGGGAPPTRPNSQQSQNRYGTLDRGSNKRPSSHGRY
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtgccggcgttctaccggtggctggcggagaagtacccgatggtggtggtggac
gtggtggaggaggagcccgtcgagatcgagggcgtccgggtccccgtcgacacctccaag
cccaaccccaacggcctcgagttcgacaacctctacctcgatatgaacgggatcattcac
ccctgcttccaccccgaggacaggccctccccgacaaccttcgccgaggttttccagtgc
atgtttgattacattgatagactcttcgtcatggttcgtcctaggaaacttatgtacatg
gccatcgatggagtggctccacgtgctaagatgaaccagcagcgttctaggcggttcaga
gctgcaaaagatgcatctgatgcggctgcagaggaagaacggttgcgtgaagagtttgag
agggaagggagaaagcttcctgcaaaacagcaatcacaaacttgtgattctaatgttatt
actccaggaacagagtttatggctgttctttcagttgctttgcagtactacattcattgc
agattgaattacgatcctggatggaaacaaattaaagttattctatctgatgctaatgtt
cctggtgaaggggaacataaaataatgtcgtatattcgtggtcaacggaatctccctgga
tttaatccgaacacccgccattgcttgtacggcttggatgcagacctcataatgttagct
ttagcaacccatgaagtacacttctctatattgagagaggtagtttatactcctgggcag
caggacaaatgtttcttatgtggtcaggtgggacatcttgccgctaactgtgaaggaaag
gcaaaaagaaaagctggggaatatgatgagaaaggtgaacctattgttccaaagaagcca
taccagttcttgaatatctggacccttcgggagtacttagaatacgagttcagaatgcca
aatcctcctttcaagattgactttgaacgcatcgttgatgatttcatcttcatgtgcttt
tttgttggcaatgattttcttccacatatgccaacactagagatcagggagggagctata
aatctgttaatggctgtgtacaagaaagaatttccttcaatgggtggctatttgacagat
tcttgcacgccggatctgaacagagttgaacacttcattcaagcagtgggctcctacgag
gataaaatatttcagaaaagggctcgtttgcatcagcgtcaagcggaaagaataaaacgg
gaaaaggcccaagcaaagcgtggtgatgatctggatccccatgtcagagatgatcttatt
gtacctgttgcaaattttcgaggatctcgccttgcatccggggcagtaccatcaccatat
gaacataatggagctcatagagaaaggaacagccaacctcggaaagctgcacgagtatca
tcatcaggttctagcattgctgctgcaattgttgaggctgaaaatgatcttgaagcacag
gagcgtgaaaacaaagaagacttgaagtcaaggcttaaagatgctattcgtgagaaatca
gatgtctttaattctgaaaatcctgaggaggataaggtaaagcttggagaaccgggatgg
agagataggtactatgaagagaagtttggagcaagaacatctgaccagatggaagaaata
cgtagggatgttgctctcaaatatactgaaggtttgtgttgggtaatgcattattactat
gaaggggtctgctcatggcaatggttttacccttatcattatgcgccttttgcttcggat
ttaaggaatttgagtgagctcaatataactttccaacttgggtcaccattcaagccattt
gatcagctcatgggagttttccctgctgcaagtgctcatgcactccctctacagtaccgg
cagctgatgacagatccaaattcaccaataattgacttctatccaaccgattttgaggta
gatatgaatgggaagagattctcttggcagggaatagcaaaactgccctttattgatgaa
gatcggttgctggctgagattaaaaaggtcgagaatactttgacgcctgaagaagcaagg
agaaacagtaccatgtgcaatatgctttttgtgaatggctcccatccactttcgccttat
atctactctcttaacagcaaatttgggaatatgccagacaaagactgcgttgaaatcaaa
gaaaagcttgacccttctccaagtggaggaatgaatggttacattgcactttgcgctggg
gatccgtcccctcctgtattcagatctcctgtagatgggctggaggacattatggacaat
caagtgatatgctcagtctacaagcttccagatcctcacaagcacattgcccgtccacct
gctggtgttatcatacctaagaagagtgttgaagctggtgatctgaaaccaccaccagtg
ttgtggcatgaagatagtggtagaagacctcatgataacaacaaccggaggccttatgat
aacaacaaccggaggcctcatgataacaaccggcaaaacccagcaggagctctatctggc
cgccaacttggggaggctgcccatcgacttgttgtaaacagcttgaatgttcggggcggt
gggcaacacaatgccccgtctatgccatatcaaacgataatgaatggtacaaactattca
aatggaaggcaccatatgggtaatcagggagtgccaccaaggatggaacaacctgctgga
cattctggctggcatgttcctagtgataacatgaccaatggtcaagcagcatatggtcat
cagcatgaaagggcagggccttcacgccatgaacgagataaccgtggaagacaacactac
cacccatatgcaagagataaccaccatgattctagaggaagagttccaccaccacctgga
taccatcaaaaccatggcaactcgcatgctgctgctccctcagcaggtcctgggtggtac
gggcaacccccaccagcatatgctgggggttaccagcctgcaccatatggagcacaacag
tggcagcagcggccttatggaggtggggcacctcccacaaggcctaactcacagcaatca
cagaaccgttatggcaccttagatagaggttctaacaagaggccctcgagtcatggccga
tattag
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