Panicum virgatum (switchgrass): 120677805
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Entry
120677805 CDS
T07260
Name
(RefSeq) putative aconitate hydratase, cytoplasmic
KO
K01681
aconitate hydratase [EC:
4.2.1.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00020
Citrate cycle (TCA cycle)
pvir00630
Glyoxylate and dicarboxylate metabolism
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
pvir01200
Carbon metabolism
pvir01210
2-Oxocarboxylic acid metabolism
pvir01230
Biosynthesis of amino acids
Module
pvir_M00009
Citrate cycle (TCA cycle, Krebs cycle)
pvir_M00010
Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
pvir_M00012
Glyoxylate cycle
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
120677805
00630 Glyoxylate and dicarboxylate metabolism
120677805
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.3 aconitate hydratase
120677805
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Gene cluster
GFIT
Motif
Pfam:
Aconitase
Aconitase_C
Acyl_transf_2
HypD
Motif
Other DBs
NCBI-GeneID:
120677805
NCBI-ProteinID:
XP_039814937
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All DBs
Position
6N:complement(10341939..10349675)
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AA seq
901 aa
AA seq
DB search
MATQATEHAFKNILTSLPKPGGGEYGKFYSLPALNDPRIDKLPYSIRILLESAIRNCDNF
QVTTNDVEKIIDWENTSPKLAEIPFKPARVLLQDFTGVPAVVDLAAMRDAMAKLGSDANK
INPLVPVDLVIDHSVQVDVARSPNAVQANMELEFSRNKERFGFLKWGSSAFQNMLVVPPG
SGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQ
PMSMVLPGVVGFKLTGKLRSGVIATDLVLTVTQILRKHGVVGKFVEFYGEGMGKLSLADR
ATIANMSPEYGATMGFFPVDHVTLDYLKLTGRSDETVSMIEAYLRANKMFVDYNEPQTER
VYSSYLELDLDEVEPSMSGPKRPHDRVPLKDMKSDWHACLDNKVGFKGFAVPKDQQDKVV
KFDFHGQPAEIKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAP
GSGVVTKYLLQSGLQEYLNQQGFHIVGYGCTTCIGNSGDLDESVSAAIAENDVVAAAVLS
GNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGIGKDGKEVYFRDIWPST
EEIAQVVQSSVLPDMFKGTYEAITKGNPMWNQLTVPEASLYSWDPKSTYIHEPPYFKDMT
MSPPGPFAVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRR
GNDEVMARGTFANIRIVNKFLKGEVGPKTIHVPTGEKLYVFDAAMRYKSEGLATIILAGA
EYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGH
ERYSINLPTNLSEIRPGQDVTVTTDNGKSFTCTLRFDTEVELAYFNHGGILPYVIRNLAQ
N
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggccacccaagcaactgagcatgccttcaagaatattctgaccagcctccctaagcct
ggaggtggtgaatatggaaagttctacagccttcctgcactaaatgatccaaggattgat
aaactgccctactccatccgtattcttctcgagtcagctatccgcaactgtgataacttt
caagttaccacaaatgatgttgagaaaatcattgattgggaaaacacatctccaaagttg
gctgagataccattcaagccagcacgtgttcttcttcaggacttcactggagttccagca
gttgttgatcttgcagctatgcgtgatgcgatggccaagttgggaagtgatgccaacaag
atcaacccattggtcccagtggatcttgttattgatcactcagtgcaggtggatgtagca
aggtctcctaatgctgtacaagcaaacatggaattggaatttagtcgcaacaaagaaaga
tttggtttccttaaatggggctctagcgctttccaaaatatgcttgttgttccccctggt
tctggtattgtgcaccaggtcaaccttgaataccttggccgagttgttttcaacacagat
ggcattctctatcctgacagtgtagttggtactgattcacacaccacaatgattgatggt
ttgggtgttgctggttggggtgttgggggtattgaagctgaggctacaatgcttggtcag
ccaatgagcatggttttgcctggtgtggttggcttcaagttgactggaaagttacggagt
ggtgtcatagctacggaccttgttcttacagtgacacaaattctaaggaaacatggtgtt
gttggcaagtttgttgaattctatggtgaaggtatgggtaagctgtctttagctgacagg
gccacaattgcaaacatgtcaccagaatatggagctaccatgggcttctttcctgtggac
catgtgacattggactaccttaaactgacaggccgtagcgatgaaactgtgtcgatgatt
gaagcatatctgcgagccaacaagatgtttgtggactacaatgagcctcaaacagaacga
gtttactcctcttatcttgagctggaccttgatgaggtggagcctagcatgtctggccca
aagaggcctcatgaccgtgtccctttgaaggatatgaaatcagattggcatgcttgcctg
gacaacaaagttggattcaagggttttgcagtgccaaaggatcagcaggataaggttgtc
aaatttgacttccatgggcagccagcggaaatcaagcatggtagtgttgttatagcagca
ataactagctgcacaaacacctcaaatcctagcgttatgcttggtgctggccttgtagcc
aagaaagcctgcgagttgggtcttgaggtgaaaccatgggtgaagactagccttgcccct
ggatcgggagttgtcacgaagtacttgcttcagagtggtcttcaagagtacttgaaccag
caaggatttcatattgttggctatggatgtaccacttgcattggaaactctggtgatctt
gatgagtctgtatcagctgctattgcagaaaatgatgttgttgctgctgctgttttgtcg
ggcaaccggaactttgagggtcgtgtgcaccctctgactcgggctaactaccttgcttcg
ccacctcttgttgttgcttatgcacttgctggcactgttgacattgattttgagaaagag
cccattggaattggaaaagatggcaaggaagtctactttagggatatatggccctcaact
gaagaaattgcacaggttgtccaatctagtgtgctgcctgacatgttcaagggcacctat
gaggctatcacaaaaggcaacccaatgtggaaccagctaactgtcccagaagcatcgctc
tactcatgggatccaaaatccacttacattcatgagcccccgtactttaaggacatgacc
atgtccccacctggtccctttgcagtgaaggatgcctactgcttactgaacttcggggac
agtattacgacagatcatatttcacctgctggaagcatacacaaagacagtcctgctgct
aagtatttgatggagcgtggtgtggacaggaaagacttcaactcatatggtagccgccgt
ggtaacgatgaagtaatggcaagaggaacatttgcaaacattaggatcgtgaacaagttc
ttgaaaggagaagttggacccaagaccattcatgttcctactggggagaagctttatgtt
tttgatgcagccatgagatacaaatctgagggccttgccaccataattctcgctggtgct
gagtacggaagtggcagttctcgtgattgggctgccaagggaccgatgctcctgggagtt
aaagctgtgattgccaagagttttgagcgtatccacagaagcaatttagtggggatggga
atcattcctctctgcttcaaagctggtgaggatgctgattcgctcggccttactgggcat
gagcggtacagcatcaaccttcctaccaacctcagcgagatccgtcctggccaggatgtg
actgtcacgaccgacaatgggaaatctttcacctgcacccttcgctttgacactgaggtg
gagctggcgtacttcaaccatggaggtattctcccctatgtcatccgcaacttggcgcag
aactaa
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