Panicum virgatum (switchgrass): 120677806
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Entry
120677806 CDS
T07260
Name
(RefSeq) starch synthase 3, chloroplastic/amyloplastic-like isoform X1
KO
K00703
starch synthase [EC:
2.4.1.21
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00500
Starch and sucrose metabolism
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00854
Glycogen biosynthesis, glucose-1P => glycogen/starch
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
120677806
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
pvir01003
]
120677806
Enzymes [BR:
pvir01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.21 starch synthase (glycosyl-transferring)
120677806
Glycosyltransferases [BR:
pvir01003
]
Polysaccharide
Storage polysaccharide
120677806
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_transf_5
CBM53
Glyco_transf_4
Glycos_transf_1
Glyco_trans_1_4
Glyco_trans_4_4
Ig_PIFI
Motif
Other DBs
NCBI-GeneID:
120677806
NCBI-ProteinID:
XP_039814938
LinkDB
All DBs
Position
6N:10362794..10382391
Genome browser
AA seq
1585 aa
AA seq
DB search
MEMALVPQSPLCSRNRPAVMLQATTLGGDPNQSFLRTSRFARSRIIRCTVASSDFPSRKS
REMVYLKVKVSAFRGYVPRLPAESSTKKSIHRNSDERTIGTFNRFLSTDTEESTSSRDLD
TAEVDLLEDASSSLSSGEVDVAEEAALDMFEVELSRNALINISLGAEEEEVDEATVEEDK
FNIDFTGVQFGSAAVQDLDPKDETNAKEDIFVADSSGVTTNSDAMREVVDEAKVEKDRID
VDVLGFGLNNEAGDIPEIFDVDVQQASFEMDILGTASDSASLGKVNVVDDAKVEKDTFQV
DDLSSASYSATYMAVESSEEISEVDNDQWQYPVLQSASIEDKANNGTHESLEPEPRTVVK
VKEQDKLDFGVDEGSAFDTHEEQQAVDYDWQEQNVTTFDEQEQDQYIIGSRRQVNSIIGL
PMQIQSVVVYSKPNQSIVASHRKDESIAVVPKKIQSVVAYKKPDQSIVASHKEDQSIVSV
PEQIKSIVGYSKAEQSIIGLHKQQQSIVHISQEKQSIVGFHKQDLSIFSTSKESQTKKLD
IPESHDALSIEEIAAKEDFHSLQKHKEDFIEEAPEMITSKKINEEHLAMVEEQKSISMGE
EQLIVTDESISVIEVEMETYEDKSLHLSEEEALWAEDEVGISEDEEHYEVEEMFVSPEQD
MQESPHDKMDPQALQRMLRELAEKNYLLGNKFFVFPEVLKANSTIALYFNRDLSAIANEP
DVLIKGAFNGWKWKFFTEKLHKSELGGDWWSCKLYIPKQAYRFDFVFFNGSTMYENNGKN
DFVIQIESTMDEHSFADFLDEEKQRELERFAMEEAERKKQTEEEKRIKEERVAHEAAKAQ
AKAEIVTKKNKLHNVLDSAKGSIDNLWYIEPITTVQEATVRVYYNRHSRPLIHSAEIWMH
GGYNNWIDGLSFAERLVHHDDKDGDWWYADVVLPQRAYALDWVFADGPPGNARIYDNNGR
QDFHSILPNNMTEEEYWAEEEQRIYTRLLQERREREEAIRMKAERRAKLKAEMKEKTMRM
FLVSQKHIVYTEPLEIRAGTTVDVLYNPSNTVLNGKPEVWFRCSFNRWMHPGGVLPPQKM
VKAEHGSHLKATVNVPQDAYIMDFVFSESEEGGIFDNRNGLDYHIPVFGSTAKEPPMHIV
HIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKHDCLNLSNVKNLHIHQSFSWG
GSEIKVWRGHVEDLCVYFLEPQNGMFGVGCVYGRNDDRRFGFFCHSALDFLLQSGSSPNI
IHCHDWSSAPTAWLYKENYAQSSLANARVIFTIHNLEFGAHHIGKAMKYCDKATTVSNTY
SREVSGHGAIAPHLGKFYGILNGIDPDIWDPYSDSFIPVHYTTENVVEGKAAAKRALQQK
LGLQQNDVPIVGIISRLTAQKGIHLIKHAMRRTLERNGQVVLLGSAPDPRIQGDFANLAN
TLQGENHGRVKMCLTYDEPLSHLIYAGSDFILVPSIFEPCGLTQLVAMRYGAIPIVRKTG
GLYDTVFDVDNDKERARARGLEPNGFSFDGADNNGVDYALNRAISAWFDARDWFHSLCKR
VMEQDWSWNRPALDYIELYRSASKL
NT seq
4758 nt
NT seq
+upstream
nt +downstream
nt
atggagatggctctcgtaccccagagccctctctgttctcggaaccgaccagcggtcatg
ctccaagcaaccaccttgggcggagaccccaatcagtctttcttgaggactagcagattt
gccagaagcaggattattcggtgcacagtagcaagttcagattttcctagtaggaaatca
agggagatggtgtatcttaaggtaaaagtctctgcttttagaggttatgttccaagactc
cctgctgagtcgagcaccaagaagagtatacaccgtaatagcgatgaacgaactattggc
acattcaataggtttttaagtactgatacagaagagtcgacaagtagtagagatttagac
actgctgaagtggatttgctggaagatgcttcaagcagtttatcttctggggaagtggat
gtggcagaagaagctgcacttgacatgtttgaggtggaattatcaagaaatgcattgatt
aacatatcattaggggcagaagaagaagaagtagatgaagctacagtcgaagaagataaa
ttcaacatagacttcacaggagtacaatttggcagtgctgcagttcaggacttggatcca
aaggatgaaactaatgctaaagaagacatatttgtggcagattcttcaggagttacaaca
aacagtgatgctatgagggaagtggtggatgaagctaaggtggaaaaggacaggattgat
gttgatgtgttgggatttggtctgaacaatgaagctggggatataccagagatatttgat
gtggatgtccaacaagcctcgtttgagatggatattttaggaactgcttcagacagtgca
agcctgggcaaagtgaatgtggtggatgatgctaaggttgaaaaagacacatttcaggtg
gatgatttaagcagtgcttcttatagcgcaacatatatggcagtggagtcttcagaagaa
atctctgaggtagataatgaccaatggcaatatccagtactacagtcagcatccatagag
gacaaggccaataatggaacacatgaaagtttggagcctgagcccaggacagttgtcaag
gtcaaggaacaggacaaattagatttcggtgtcgatgagggatcagcttttgatacccat
gaagaacagcaagcggtagattatgattggcaagagcaaaatgttaccacttttgatgaa
caagaacaagaccagtatattattggttctcgcagacaagtcaactcaattattggtttg
cctatgcaaatccaatctgttgttgtttacagtaaaccaaaccaatctattgttgcttct
catagaaaagatgaatcaattgctgttgtgcctaagaaaatacaatctgttgttgcttat
aagaaaccagatcaatctattgttgcttctcataaagaagatcaatcaattgttagtgtg
cctgagcaaatcaaatccattgttggttacagtaaagcagaacaatctattattggtttg
cacaaacaacaacaatcgattgttcatatctctcaagaaaaacaatccatagttggcttt
cataagcaagatctatcaattttcagcacctccaaagagtctcaaacaaagaaacttgat
attcctgagagtcatgatgcactttctatagaggaaatagcagctaaggaagatttccat
tcgttacaaaaacataaggaagatttcattgaagaagcaccagagatgataactagcaag
aaaatcaatgaggaacaccttgcaatggttgaagagcagaaaagtataagcatgggggaa
gaacaattgattgttactgatgaaagcatttcagtgattgaggtggagatggaaacgtac
gaggacaaatctctgcatctttccgaagaagaggctctatgggctgaagatgaagtaggg
atatctgaggatgaagaacactatgaagttgaggagatgtttgtgtctcctgaacaagat
atgcaagaatcaccacatgataaaatggatccacaagcactacaaaggatgcttcgagaa
cttgctgaaaaaaattatttactaggaaacaagttttttgtttttccagaggtactgaaa
gctaattcaactattgctttgtatttcaatcgtgatctatcagctatagccaatgagcct
gacgtactaataaaaggagcattcaatgggtggaagtggaagtttttcactgaaaaattg
cacaagagcgaactgggaggggactggtggtcctgcaaactatacattcccaagcaggca
tacagatttgattttgtgttctttaatggtagcactatgtatgaaaataacggtaagaat
gatttcgtgatacaaatagaaagcaccatggatgaacattcgtttgcggatttcttggat
gaagaaaagcaaagagaacttgagagatttgccatggaagaagctgaaaggaagaaacaa
actgaagaggagaagcgaataaaggaagaaagggtggcacatgaagctgccaaggcacaa
gcgaaggctgagatagtgacaaagaagaataaattgcataatgtattggattcagccaaa
ggatctattgataatttgtggtacatagaacctatcactactgtgcaagaggctactgtc
agagtctattacaataggcactcgagaccccttattcatagtgctgagatttggatgcac
gggggatacaacaattggattgatggactctcctttgctgaaagacttgttcatcatgat
gacaaagatggtgattggtggtatgcagatgttgtcttacctcaaagagcatacgcgttg
gactgggtgtttgctgatgggccgccagggaatgcaaggatttatgataacaatggcaga
caggattttcattctatcctgcccaataacatgactgaggaagaatattgggcggaagaa
gaacagaggatctatactaggcttctacaagagaggagagaaagggaggaggctattaga
atgaaggctgagagaagggcaaaattgaaagctgagatgaaagaaaagactatgagaatg
tttctggtttctcaaaaacacatagtttataccgaaccacttgaaatacgtgctggaacc
acagttgacgttctttacaatccttctaatacagtgctaaatggaaagccagaggtttgg
tttcgatgttcttttaaccgttggatgcatccaggtggtgtgttgccaccccagaagatg
gtaaaagcagaacatggttcgcacttaaaagcaacagttaacgttcctcaggacgcctat
ataatggacttcgttttctcggagtcagaagaaggtggaattttcgacaacaggaatggc
ttggactatcatattcctgtttttggttcaactgcaaaggaacctcctatgcatattgtc
cacattgctgttgagatggctcccatagcaaaggttggaggtcttggtgatgttgttacg
agtctttcacgtgctgttcaagatttaggacacaatgttgaggttattcttccgaagcac
gattgcttgaatctaagcaatgtgaagaatttgcatattcatcaaagtttttcttggggt
ggttctgaaataaaagtatggcgtggacatgtcgaagacctctgtgtttacttcttggaa
cctcaaaatgggatgtttggagttggatgtgtatatggaaggaatgatgaccgtcgattt
ggcttcttctgtcattctgctctagattttctcctccagagtggatcttcaccgaatata
atacactgccatgattggtcaagtgctcctactgcctggctatacaaagaaaactatgca
cagtccagtttggcaaatgcacgggtcatatttacgatccataatcttgaatttggagca
catcatattggcaaagcaatgaaatattgtgataaggccacaactgtctctaatacatat
tcaagggaagtgtcaggccatggtgccattgctcctcatcttggaaagttctacggcatt
ctcaatggaattgatccagatatctgggatccatacagtgacagctttatcccggtccat
tacactaccgagaatgtcgtcgaaggcaaggctgctgcaaagagggccttgcaacagaaa
cttgggttacagcaaaatgatgtgcccattgttggaatcatcagtcgcctgacagcccag
aagggaattcacctcatcaagcatgcgatgcgtcgaacacttgaaaggaatggacaggtg
gttctgcttggttctgccccagaccctcggatccaaggtgattttgccaacttggcaaat
actctccagggtgaaaatcatggtcgagtgaagatgtgtttgacctacgatgagcctctt
tcacatctgatatacgctggctctgacttcattctggttccatccatatttgagccttgt
ggcttaactcagttggtcgccatgcggtatggagccatccctattgtccggaaaactgga
gggctctacgacactgtctttgacgtggacaatgacaaggaacgggcccgggctcgaggc
cttgagccaaacgggttcagctttgatggagctgacaacaatggtgtcgactatgctctg
aatagggcgatctctgcttggttcgacgcccgggactggttccactccctctgcaagagg
gtcatggagcaggactggtcatggaaccggcctgccctggactacatcgagctctaccga
tcggcgtccaaactgtga
DBGET
integrated database retrieval system
