Panicum virgatum (switchgrass): 120677810
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Entry
120677810 CDS
T07260
Name
(RefSeq) starch synthase 3, chloroplastic/amyloplastic-like isoform X1
KO
K00703
starch synthase [EC:
2.4.1.21
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00500
Starch and sucrose metabolism
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00854
Glycogen biosynthesis, glucose-1P => glycogen/starch
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
120677810
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
pvir01003
]
120677810
Enzymes [BR:
pvir01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.21 starch synthase (glycosyl-transferring)
120677810
Glycosyltransferases [BR:
pvir01003
]
Polysaccharide
Storage polysaccharide
120677810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_5
CBM53
Glyco_transf_4
Glycos_transf_1
Glyco_trans_4_4
Glyco_trans_1_4
Motif
Other DBs
NCBI-GeneID:
120677810
NCBI-ProteinID:
XP_039814943
LinkDB
All DBs
Position
6N:10428830..10438696
Genome browser
AA seq
1578 aa
AA seq
DB search
MEMMLRPRSLICPLSDQALVIRPAFVGNGPAQALFRTSRCARSRLIRCPVASSDRPNRKS
RRMVCPKIKVNAFRGYAQKVTIQSSTKKSEHHGCDEETIGTDNRQLSTDVVESTSGAGAE
IAKEDPLHNASRYPIFREIEEVGLDFFEAELPGNALINISLGELEVVDEAEVEEDKFEVD
FSGIALSSAAVWELDSEDEANTKEDIFVVDLSRIASDSAVVGEVVDEIEAIHETFNVESS
GNASSSGIYGYVDEVGEPRADQEVTFEMDVSRLGELNVVDHAKVGTNIFEIDFLSSSSGK
AIYIAAESSEENLAKGENGQGQCPALPSTSMDDSAIDSPENSKSLQEQHNLVFDIDKEST
IDSCVEDQPVVDYHKQGGNVAYFDKQKQLTYEFHEQDLSIVQFPEQNQAIFCFQKQDISF
LEQKQAIVGSYKQDQSIVNSHEQDRSVDGSHCQDESIVGMHEPIRCIVDCNKSDQSIVGS
YRRDKSIVGAPKKIQSIVGYYKSDESNVVSHKQDGSITGVPIQIQSIIAYSTSDQSIVDL
PKQHQSIVHIPEQKQSIVGFHIQDLPIVGNSKDSQTKQHAIVRTHDALFTEEENFEMIEE
QKSIRVDEEQWIATKERISMNEAEFLLLLSKKESSWAEEQCKVDETSLFAEQDILDLPHD
NVDPQALQRTLQELAQKNYSLGSKLFAFPEVLKADSTIDLYFNRDLSTLANEPDILIKGA
FNGWKWRFFTEKLHMSELGGDWWCCKLYIPKQAYRLDFVFFNGCTVYENNGNNDFMIQIE
STMDEHLFEGFLVEEKKRELERLAIEEAERMRQAEEQRRKAEERAEDEADMAQSKVEVEM
KKNKLHNVLGLARPSIDNLWYIEPVLTGQGAAVRLYYNRNSRPLVHSTEIWMHGGYNNWI
DGLSFSERLVHVDYKDGDWWYADVVLPERIYVLDWVFADGPPGNARNYDNNARQDFHAIL
LNNMTEEEYWVEEEQWIYTRLQQDRREREETFKRKAERSAKLKAEMKKKTMKMFLVSQKH
IVYTEPLEIHAGTTVDVLYNPSNTVLTGKPEVWFQCSFNRWMHPGGVLPPQKMVTVGNGA
HLKATVNVPRDAYMMDFVFSELEGDGIYDNRNGLDYHIPVFGSVAKEPPMHIVHIAVEMA
PIAKVGGLADVVTSLSRAVQDLGHNVEVILPKHGCLNLSNVKNLHVHQSFSFGGSEIEVW
RGLVEDLCVYFLEPKNGIFGVGCVYGRNDDRRFGFFCHSALEFLLQSGSSPHILHCHDWS
SAPVAWLYKENYAQSSLANARVVFTIHNLEFGAHYIGKAMRYCDKATTVSNSYSREVSGH
GAITPHLGKFYGILNGIDPDIWDPYNDKFIPVHYTSENVVEGKIAAKKALQKKLGLQEND
VPIVGIVTRLTAQKGIHLIKHAVHRTLEWNGQVVLLGSAPDPRIQGDFVNFANALHGVNN
GRVRLCLTYDEPLSHLIYAGSDFILVPSMFEPCGLTQLVAMRYGAIPIVRKTGGLYDTVF
DVDTDKERARARGLEPNGFNFDGADSRGVDYALNRAISAWFDARWWFHSLCKRVMEQDWS
WNRSALDYIELYHSASKF
NT seq
4737 nt
NT seq
+upstream
nt +downstream
nt
atggagatgatgctccggccccggagccttatttgccccctgagcgaccaagcgctcgtg
atccgtccagcgtttgtgggcaacggccctgctcaggcattgtttaggactagtagatgt
gccagaagcaggcttattcgatgcccagtagcaagttcagatcgtcctaataggaaatca
aggaggatggtgtgtcctaagataaaagtcaatgcttttagaggctatgctcaaaaagtt
actattcaatcaagcacgaagaagagcgaacaccatggttgtgatgaagaaactattggt
acagacaacaggcagttaagtactgacgtggtagagtcaacaagtggcgcaggtgcagaa
attgccaaagaggatccgcttcataatgcttcaaggtatccaatatttagggaaatagaa
gaagttgggttggacttttttgaggcagaacttccaggaaatgcattgattaatatatca
ttaggcgaattagaagtagtggatgaagctgaggttgaagaggataaatttgaggtggat
ttctcaggaattgcattgagcagtgctgcagtttgggaattggattcagaggatgaagct
aacactaaggaagacatatttgtagtagatttgtcaagaattgcatcagatagtgctgta
gtgggggaagttgtagatgaaattgaggctatacatgagacatttaatgtggagtcatca
ggcaatgcttcaagcagtggaatatatgggtatgtggatgaggtcggtgaaccacgggct
gatcaagaagttacatttgagatggatgtatcaagactgggggaactgaatgtggtggat
cacgctaaggttgggaccaatatattcgagatagattttttaagcagttcttcaggtaaa
gcaatatatattgcagcggagtcttcagaagaaaacttagctaagggagagaatgggcaa
gggcaatgtccagcactgccttcaacatccatggatgacagtgccattgattcacctgaa
aattcaaagagcctacaggaacaacacaacttagtttttgatattgacaaggaatcaact
attgattcctgtgtagaagaccagccagtggtagattaccataagcaagggggaaatgtt
gcttattttgataaacaaaagcaattaacttatgaattccatgaacaagacctatctatt
gttcagtttcctgagcaaaaccaagccattttttgtttccaaaaacaagatattagtttc
ttggagcaaaagcaagcaattgttggctcctataaacaagatcaatcaattgttaattcg
catgagcaagatcgatctgttgatggttctcattgtcaagatgaatcaattgtcggcatg
catgagccaatccgatgcattgttgactgcaataaatcagatcaatctattgttggttct
tatagaagagataaatcaattgttggtgcgcctaagaaaatccaatccattgtcggctac
tataaatcagatgaatctaatgttgtttctcacaaacaggatggatcaattactggtgtg
cctatacaaatccaatccattattgcttacagtacatcagatcaatctattgttgatttg
cccaaacaacaccagtcaattgttcatatccctgaacaaaaacaatccatagttggtttc
catatacaagatttaccaattgttgggaactccaaagattcccaaacaaagcaacatgcc
attgttcggactcatgatgcattgtttaccgaggaggaaaattttgagatgattgaagag
cagaaaagcattagagtggatgaagaacagtggattgctaccaaggaaaggatctccatg
aacgaggctgaatttcttcttctgctttctaaaaaggagagttcatgggctgaagaacaa
tgtaaagttgatgagacatctctgtttgctgaacaagatatcctggacttacctcacgat
aacgtggatccacaggcactacagaggacgcttcaagaacttgcccaaaaaaattattct
ctgggaagcaagctttttgcttttccagaggtattgaaagctgattcaactattgacctc
tatttcaatcgtgatttatcaactttggccaacgagcctgacatactcatcaaaggagca
ttcaatgggtggaagtggagatttttcactgaaaaattgcacatgagcgaattgggcggg
gactggtggtgttgcaaactatatattcccaagcaggcgtatagattagattttgtgttc
tttaacggctgcacagtatatgaaaataatggcaataacgattttatgatacaaatagaa
agcaccatggacgaacatttgtttgagggtttcttggttgaagaaaagaaaagagaactt
gagagacttgccattgaagaagctgaaaggatgagacaagctgaagagcagcggcgaaag
gcagaagaaagggcagaagatgaagctgacatggcacaatcgaaggttgaagttgagatg
aagaagaataaattgcataatgtattgggtttagcccgaccatcaattgataatttgtgg
tacatagagcctgtcctaactggacaaggggctgctgtcagattgtactataacagaaat
tcgaggccccttgttcacagtacggagatttggatgcatgggggctacaacaattggatt
gatggactctctttttctgaaagacttgttcatgttgattacaaagatggtgactggtgg
tatgcagatgttgtcttacctgaaagaatatatgtgttggactgggtttttgctgatggg
ccaccaggtaacgcaaggaattatgacaacaatgcaagacaggattttcatgctatcctt
ctgaataacatgactgaggaagaatattgggtggaagaagaacagtggatatatacaagg
cttcaacaagataggagagaaagggaggagacttttaaaaggaaggctgagagaagtgca
aaactgaaagctgagatgaagaaaaagactatgaaaatgtttctggtttctcaaaaacac
attgtttatactgagccacttgaaatacatgctggaaccactgttgatgtgctttacaat
ccttctaatacagtgctaactggaaagccggaggtttggtttcaatgttcctttaaccgt
tggatgcatccaggtggtgtgttgccacctcagaagatggtaacagtaggaaatggtgca
cacttaaaagcaacagttaatgtgccacgagatgcctatatgatggattttgttttctcg
gagttagaaggtgatggaatttatgacaacaggaatgggttggactatcatattcctgtt
tttggttctgttgcaaaggagcctcctatgcacatagtccacattgctgttgagatggct
cccattgcaaaggttggaggtcttgctgatgttgttactagtctttcacgtgctgtccag
gatttaggacacaatgttgaggttattcttccaaagcacggctgcttgaatctaagcaat
gtgaagaatttacacgtgcatcaaagtttttcttttggtggttctgaaatagaagtatgg
cgtggactagtcgaagacctctgtgtttacttcttggaacctaaaaatgggatatttgga
gtcgggtgtgtatatggaaggaatgatgaccgtcgatttggcttcttctgtcattctgct
ctagagtttctcctccagagtggatcttctccacatatactacattgccatgattggtca
agtgctcctgttgcctggctatacaaggaaaactacgcacaatccagtttggcaaatgca
agagttgtatttaccatccataatcttgaatttggagcacattatattgggaaagcaatg
agatattgtgataaggccacaactgtttctaattcgtactcaagggaagtatcaggtcat
ggtgccatcactcctcatcttggaaaattctatggtattctcaacgggattgatccagat
atttgggatccgtacaacgacaaatttatcccggtccattacacttctgagaatgttgtt
gaaggcaagatcgctgcaaagaaagccttgcaaaagaagcttgggttacaggaaaacgat
gtgcccatcgttggaatagtcactcgcttgacagctcagaagggaatacacctcatcaag
catgcagttcatcggacacttgaatggaacggacaggtagttttgctcggttcagcccca
gaccctcgaatccaaggtgactttgttaactttgcaaatgctctccatggtgtaaacaat
ggccgagtgagactctgtttaacctacgacgaacctctttcacatctgatatacgccggc
tctgatttcattctggttccatctatgtttgagccttgtgggttaactcagctggttgct
atgcgttatggagccatccctattgtccggaaaactggaggtctctacgacactgtcttt
gacgtggacactgacaaggaacgggcccgggcacgaggccttgagccgaacgggttcaac
ttcgacggagctgacagccgtggtgttgactacgcccttaacagggcgatctcagcttgg
tttgacgcccggtggtggttccactccctctgcaagagggtcatggagcaagactggtcg
tggaaccggtctgccctggactacatcgagctttaccattcggcgtccaaattttga
DBGET
integrated database retrieval system
