KEGG   Panicum virgatum (switchgrass): 120677816
Entry
120677816         CDS       T07260                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 12
  KO
K03009  DNA-directed RNA polymerases I, II, and III subunit RPABC4
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03020  RNA polymerase
pvir03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120677816
  09124 Replication and repair
   03420 Nucleotide excision repair
    120677816
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvir03021]
    120677816
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120677816
Transcription machinery [BR:pvir03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     120677816
  RNA polymerase III system
   RNA polymerase III
     120677816
  RNA polymerase I system
   RNA polymerase I
     120677816
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      120677816
SSDB
Motif
Pfam: Zn_ribbon_RPAB4 Zn_Ribbon_YjdM DUF7577 DUF5816 Zn_ribbon_13 DUF7129 HypA Zn_ribbon_3 Cas12f1-like_TNB
Other DBs
NCBI-GeneID: 120677816
NCBI-ProteinID: XP_039814956
LinkDB
Position
6N:10566787..10569618
AA seq 52 aa
MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
NT seq 159 nt   +upstreamnt  +downstreamnt
atggatcctcagcagccggaaccggtcagctacctctgcggagattgtggagccgagaac
acgctgaagccgggtgatgtgatccagtgccgcgagtgcggctaccgcatcctctacaag
aagcggacccgccgaattgtccaatatgaagcgcgctga

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