Panicum virgatum (switchgrass): 120678350
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Entry
120678350 CDS
T07260
Name
(RefSeq) protein indeterminate-domain 5, chloroplastic-like isoform X1
KO
K25870
zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120678350
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120678350
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GFIT
Motif
Pfam:
C2CH-4th_BIRD-IDD
C2H2-2nd_BIRD-IDD
C2CH-3rd_BIRD-IDD
zf-C2H2
zf-C2H2_6
zf-met
zf-C2H2_jaz
zf-C2H2_4
zf-C2H2_STOP2_C
Motif
Other DBs
NCBI-GeneID:
120678350
NCBI-ProteinID:
XP_039815416
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Position
6N:complement(52049791..52055880)
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AA seq
528 aa
AA seq
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MAAAHLFGLGDAQMQPPLPQQAAPPPPAAAPAPKKKRNQPGNPNPDAEVIALSPKSLLAT
NRFVCEVCNKGFQREQNLQLHRRGHNLPWKLKQKNPKETRRRVYLCPEPTCVHHDPSRAL
GDLTGIKKHYCRKHGEKKWKCDKCNKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSF
ITHRAFCDAMAQESARAPPIGAGMYGSGGMALGLSGLAASQLHSFQDQAHSSAATAIGGN
PAAQFEHLMPSSAGSPAFRGAQPASSSSSPFYLGGAEDGHQSQPGHTSLLHGKPAFHGLM
QLPEQHGQPGSNGLLNLGFFSGASSGQDARLVFPNQFNGATGGNGRGDGSEHGNSGANTG
SAAIFSGNLMGNQMAGGGGGFSSSLYNSTETVAPPQMSATALLQKAAQMGATTSGGGGGS
VNSLLRGLGSGGALNGRPSGAAGFMAGESSSSRSTSQAENESQFRDLMNSLAASGSGGFP
GMDDGKLSTRDFLGVSGGVVRSMGGAAGLPLRHGAAGIGMGSLDPEMK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcccacctgttcggactcggcgacgcgcagatgcagccgccgctgccgcag
caggcggcgcctcctcctccggcagccgcgccggcgcccaagaagaagaggaaccagccc
ggtaacccaaatccggacgctgaggtgatcgcgctgtcccccaagtcgctgctggcgacg
aaccggttcgtgtgcgaggtgtgcaacaaggggttccagcgggagcagaacctgcagctg
caccggcgcgggcacaacctgccgtggaagctcaagcagaagaaccccaaggagacgcgg
cggcgggtgtacctctgcccggagccgacgtgcgtccaccacgacccgtcgcgggcgctt
ggcgacctcaccggcatcaagaagcactactgccgcaagcacggcgagaagaagtggaag
tgcgacaagtgcaacaagcgctacgccgtgcagtccgactggaaggcgcactccaagacc
tgcggcacccgcgagtaccgatgcgactgcggcaccctcttctccaggagagacagcttc
atcacccaccgtgcgttctgcgacgcgatggcgcaggagagtgcacgggcgccgccgatc
ggcgcgggcatgtacggctccggcggcatggccctcggcctctccgggctggccgcctct
cagctgcattcctttcaagaccaagcccactcgtcggccgccaccgccatcggcggcaat
ccggcggcgcagttcgaacacctcatgccgtcctcggccggctccccagcgttccgcggc
gcgcagccagcgtcgtcatcctcctcgccgttctacctcggcggcgccgaggatggacac
cagagccaaccgggacacacctctctgctccacggcaagccggccttccacggcctgatg
cagctgccggagcagcacggccagccggggagcaacggtctcctaaacctggggttcttc
tcgggcgcgagcagcggccaggacgcgcgcctcgtcttcccgaaccagttcaacggtgcc
acaggagggaacggccgcggcgatggcagcgagcatggcaacagcggcgccaacaccggg
tccgcagccatcttctccgggaacctaatgggcaaccaaatggcaggcggcggcggcggc
ttctcttcatccttgtacaactcaaccgagaccgtcgcgccgccgcagatgtcggcgacg
gcactgttacagaaggccgcgcagatgggcgcgacgacgagcggcggcggaggcggcagc
gtgaactctctgctcagggggctcggtagcggcggcgccttgaacgggaggccatccggt
gctgctgggttcatggccggggagagctcgtcgtcgaggagcacttctcaggccgagaac
gagagccagttccgggacctgatgaactcgctggcggcttccgggagcggtggcttcccc
ggcatggacgacgggaagctgagcacgagagacttccttggcgtcagcggcggcgtcgtg
cggagcatgggcggcgcggcggggcttccgctgcggcacggcgccgcgggcattggcatg
ggctcattggacccagaaatgaagtag
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