Panicum virgatum (switchgrass): 120678364
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Entry
120678364 CDS
T07260
Name
(RefSeq) protein PAF1 homolog
KO
K15174
RNA polymerase II-associated factor 1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120678364
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
120678364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Paf1
Motif
Other DBs
NCBI-GeneID:
120678364
NCBI-ProteinID:
XP_039815445
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All DBs
Position
6N:complement(6395329..6402919)
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AA seq
627 aa
AA seq
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MASYRPYPPPPQHPPPPPPQGGFPPQMNPYAPPPPQQAPYGRMPAPPYHTGAPPPPPPGP
PPPHQPQFNFGPGPPQQAPPPPQMYYQPPPPPYGGTSNPPPPPPSAPPPPPSPPPAAPPP
PPPPPAQLPPAQAPPPPKEQRPKAALPRAETEEERRARKKREFEKQRVEDRKQQQMMRQT
QATILQRTQQVRTSQQQPSSQSRHHHPPGGSRAAATGSRPASAPNAERFENRLKKPTTFL
CKHKFRNELPDPSAQLKWLPLNKDKDRYTKYRITSLEKNYMPKMIVPEDLGIPLDLLDMS
VYNPSAVQPPIAPEDEELLRDDEVLTPIKQEGIRKKERPTDKGVSWLVKTQYISPLSTDA
AKTSLTEKQAKERRESRMGRNAFLDSLNDREKQIKAIEESFRAAKSRPVHQTKRGMQAEW
VMPLLPDFDRYDDPFVMVNFDGDPTADSEQYNKLERPVRDECESWAVMKSFSVNGTDPTK
QEKFLAYMAPAPHELARDLDDEDDIQYSWLREYHWEVRGDDKDDPTTYLVTFDEEEGARY
LPLPTKLVLQKKKAKEGRSGDEIEHFPVPSRITVSRTAHGGTMERGESSSMHENLKRRRS
PVDDDLDEHQKHSWGDVDQYSGEEYSE
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtacaggccgtacccgccgccgccgcagcacccgccgcccccgccaccgcag
ggcggcttcccgccgcagatgaacccgtacgcgccgccgccgccccagcaggcgccgtac
ggccggatgccggcgccgccttaccacacgggtgccccgccgccgccaccacctggcccg
ccgccgccgcaccagccgcagttcaatttcggccccgggcccccgcagcaggccccacct
ccgccgcagatgtactaccagcccccgccgccgccctatggcgggaccagcaacccgcca
cctcctcccccttcggcgccacccccgcctccgtcccctccccctgcggccccgcccccg
ccacctccgcctccagcccagctgccgcctgcccaggccccgccgccccccaaggagcag
cggcctaaggccgcgctgccgagggccgagacagaggaggagcgacgtgcacggaagaag
cgcgagttcgagaagcagcgggtggaggaccggaagcaacagcagatgatgcgccagaca
caggccaccattctgcagaggacgcagcaggtgcgcacttcacagcagcagccgtcatcg
cagagtcgccaccaccacccaccgggtggctctcgggcagcagcaactgggtctcgccca
gcatcagcgcctaatgccgagaggtttgagaataggctaaaaaagccaacaacattcctg
tgcaagcacaagtttaggaatgaacttccagatccaagtgcccagctgaaatggctgccc
ttgaataaggataaggaccgatataccaaatacaggataacttcattggagaaaaattac
atgcctaaaatgattgtcccagaggaccttgggatacctctcgacctacttgacatgagt
gtatacaacccctctgctgttcagccacccatagctcctgaagacgaagagctactgaga
gatgatgaggtcctcacccctattaaacaagaaggtataaggaaaaaggagaggcccacg
gacaaaggtgtttcttggctggtcaaaacacaatatatatctccactgagtactgatgca
gccaaaacgtcccttactgagaagcaggcgaaggaaaggcgagaatcaaggatgggccgt
aatgctttcctggacagtcttaatgatagagagaaacagatcaaagccattgaagaatcc
ttcagagcagccaaatcacggcctgttcaccagactaaacgtgggatgcaagctgagtgg
gttatgcctctgctacctgattttgataggtacgatgatccgtttgtcatggtgaatttt
gatggagacccgactgctgattctgagcagtacaacaagcttgaaagacccgtacgtgat
gaatgtgaatcctgggctgtgatgaaaagttttagtgtcaatggtacagaccctacaaaa
caagagaagtttttggcatacatggccccagcaccccatgagcttgctagagacttggat
gatgaagatgatatccagtattcttggctaagagaatatcactgggaagtaagaggagat
gataaagatgacccgacaacataccttgtcacatttgatgaggaggagggtgcaagatat
ttgcctcttcccactaagctagttttgcagaagaagaaagctaaggaggggagatctggg
gatgaaattgagcattttccagtgccttcccgaattaccgtgagcagaacagctcatggt
ggtaccatggagcgtggagaatcttctagcatgcatgagaatttaaagcgccgaagatct
cctgttgatgatgatcttgatgagcaccaaaagcattcttggggagatgtcgaccaatat
agtggagaagaatattctgagtga
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