Panicum virgatum (switchgrass): 120678382
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Entry
120678382 CDS
T07260
Name
(RefSeq) peroxisome biogenesis protein 5-like isoform X1
KO
K13342
peroxin-5
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120678382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120678382
Membrane trafficking [BR:
pvir04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
120678382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_16
TPR_17
TPR_CcmH_CycH
TPR_14
TPR_8
TPR_19
TPR_7
TPR_9
TPR_12
PPTA
TPR_20
PsiA
PEX18_PEX21_C
TPR_10
Motif
Other DBs
NCBI-GeneID:
120678382
NCBI-ProteinID:
XP_039815476
LinkDB
All DBs
Position
6N:46097835..46106121
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AA seq
734 aa
AA seq
DB search
MAMRHLITGQNSCAPDGASSSNPLNAFANAVLGQSSKTQSIKELPGSVSVPSTSDFGTAP
PLSTIPGSENEFKQDQRPLARGADFIRGGPANDWIESFRPPGVPEFGGAESQYAEFDQIY
NNAGTTIRPPLDGPPQRVLSGVLHSFLASGRAGVPFQPVPVPALGLSESDKQCIRDRSCI
MARHILADQPEEYIQDQVNTLLHSLDIDNRMRGPMHGQYPELEQYWNQSQSSMGPASMHN
AADKWITEFGNQNNNPESWANSFEQQYGPNGWASEFEQHQSQMAMGQMGGANMANLAAME
QSRMLAQTLASNNDPKFQNSKFFQFVSKMSRGELIIEDNQVKQGSASQSNGWADEFQTQY
NANANSWADQFAHEKLSQGADKWASEFASEHNQGALNDNWVDEFSKLNVTDEWAEEFSGG
GFGESSADPWADEFQEQLSSFKQSSSTSRGVYVFSEMNPYVGHPNPMQEGQELFRKGLLS
EAVLALEAEVLKNPDNAEGWRLLGVTHAENDDDQQAIAAMMRAHEANPTNLEVLLALGVS
HTNELEQGEALRYLYRWLQNHPKYGGLAPPQATDSPYGPDVVRLFNEAAQMSPEDADVHI
VLGVLYNLSREYDKAIASFKTALQLKPQDYSLWNKLGATQANSIQSADAILAYQKALDLK
PNYVRAWANMGISYANQGLYEDSIRYYVRAVAMNPKADNAWQYLRISLSNASRADMIAAC
DARNLDALQKEFPL
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgcggcacctcatcacgggccagaacagctgcgccccggacggcgcctcgtcg
tccaaccccctcaacgccttcgccaacgccgtcctcggccagtcctccaagacgcagtcc
attaaggaacttcctggctcagtcagtgttccatctacatctgattttggcacagctcct
cccttgtcaacaatccctggttcagagaatgagttcaaacaagatcagcgaccccttgca
cggggtgccgacttcattcgtgggggtcctgctaatgattggattgaatcttttcgccct
ccaggggttcctgaatttggaggagcagaatcacaatatgctgaatttgaccaaatctat
aacaatgcagggacaaccatcagaccacccttggatggtccaccacaaagggtgttgtct
ggtgtcttgcattcttttcttgcaagtggcagagcaggcgtgccgtttcaacctgttcca
gtaccagctcttggtttatctgaaagcgacaaacaatgcatacgtgatcgtagctgcata
atggcacggcatattctggctgaccaaccagaggaatatatacaggatcaggtcaatact
ttgttgcattctcttgatattgacaaccgaatgagaggccctatgcatggacagtaccca
gagctggagcagtactggaatcagtcccaaagttctatgggacctgcctcgatgcataat
gctgcagataaatggattaccgagtttggcaatcaaaataataacccagaaagctgggca
aattcttttgagcagcaatatggcccaaatggttgggcctctgagtttgaacagcatcaa
tctcagatggccatgggtcagatgggaggagcgaacatggctaacctggctgctatggag
caatctcgtatgcttgcacaaacattagcaagtaataacgaccccaagtttcagaattct
aagttcttccagtttgtttcaaagatgagccgtggtgaacttattatagaagataatcaa
gtaaaacaaggttcagcatcccaatccaatggctgggctgatgaatttcaaacacagtac
aatgctaatgcaaactcatgggcggatcagtttgcacatgaaaagctttcacaaggggcg
gataaatgggctagcgagttcgctagtgaacataatcagggtgcgttaaatgataactgg
gttgacgagttttcaaaattaaatgttactgatgaatgggcagaagaattcagtggtggt
ggttttggcgaaagctcggcagatccatgggcagatgagttccaagaacagttgtcatcc
ttcaaacaaagctcgagtacttctcgaggggtttatgtcttttctgagatgaacccgtat
gttggtcaccctaatccaatgcaagaaggacaagagctcttccgcaagggcctcttaagt
gaagctgttcttgctttagaggctgaagttttgaagaatcctgataatgctgaaggttgg
aggttgctaggagtaacacatgcagaaaatgatgatgaccaacaggccatcgcagcaatg
atgcgtgcgcacgaagctaatcctacaaaccttgaggttcttctcgctttaggtgtcagt
cacacaaacgaattggagcagggagaagcattaagatatctttataggtggcttcagaat
catccaaaatatgggggccttgcccctccacaggcgactgattcaccttatggtccagat
gttgttagattgtttaatgaagctgctcagatgtcacctgaagatgcagacgttcatata
gttctgggagtcttatacaacctctcaagagagtatgataaagctatagcttcatttaag
acagcactgcagctcaaacctcaggactattcactctggaataagcttggtgcaacccaa
gcaaacagcatccagagtgctgatgcaatattggcgtatcagaaggctctagacttgaaa
ccgaactatgtccgtgcatgggctaatatgggaatcagctatgccaaccagggtttgtac
gaagattctattcgatactatgtaagagcagttgcgatgaatccgaaagctgacaatgcc
tggcagtacttgaggatttctctcagcaatgcgtcacgagctgacatgattgctgcatgt
gatgcccgcaacctcgatgctcttcagaaagagtttcctctctga
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