Panicum virgatum (switchgrass): 120678446
Help
Entry
120678446 CDS
T07260
Name
(RefSeq) protein transport protein SEC23-like
KO
K14006
protein transport protein SEC23
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120678446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120678446
Membrane trafficking [BR:
pvir04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
120678446
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
Gelsolin
zf-Sec23_Sec24
Vps36-NZF-N
Motif
Other DBs
NCBI-GeneID:
120678446
NCBI-ProteinID:
XP_039815566
LinkDB
All DBs
Position
6N:44163932..44171205
Genome browser
AA seq
763 aa
AA seq
DB search
MSEFLDLEAQDGIRMTWNVIPGTKQDATNCVVPVSAIFTPLKPNPAIPVLPYAPLRCRMC
HSILNSFSIVDFVAKIWVCPFCFQRNHFPQHYSSISENNLPAELFPQYTTVEYASTAEMG
PVAPPVFLFVVDTCMIEEEIGYLKSALAQAIELLPDQSLVGFITFGTYVQVHELGFGLLP
KSYVFKGTKEVTKEQILDQMSFFAGKTKPTTGVIAGARDGLSTESIARFLLPASECEFVL
NSVIEELQKDPWPVPADKRSSRCTGVALSVAASLLGVCVPGSGARIMAFVGGPSTEGPGS
IVSKSLSEPIRSHKDLDKGSAPLYNKAVKFYEDISKQLVNQGHVLDLFACALDQVGVAEM
KVAVERTGGIVVLAESFGHSVFKDSLRRIFQSSDNDLDLSFNGIFEINCSKDVKIQGIIG
PCTSLEKKSPLSSDTVIGQGNTSAWKMCGLDRKTSLCLIFDIAKKDGPESIGQLASNQFY
FQFLTYYQHHEGQMRLRATTLSRKWVAGSGGVQELIAGFDQEAAAAVMARLVSFKMEAEA
DFDPIRWLDRALISLCSKFGDYHKETPSSFSLSPRLSIFPQFIFNLRRSQFVQVFNNSPD
ETAYFTMMLNRENVANAVVMIQPSLISYSFQSAPEPVLLDVTAIAADRILLLDSYFTVVI
FHGITIAQWRKAGYQDQEGHEAFAQLLQAPQEEADAIIKERFPVPRLVVCDQHGSQARFL
LAKLNPSVKYNSNNPPPPGGDVIFTDDVSFQVFMDHLQRLAVQ
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagtttctggaccttgaggcccaggatgggataagaatgacatggaatgtcata
ccaggcacaaagcaggatgctactaactgtgtggtccctgtttccgccatttttactcct
ctaaagccaaatcctgcaattcctgttcttccttatgcccccctccgttgccgcatgtgc
cactctatcctcaactccttctccatagttgactttgttgcaaagatttgggtctgtcca
ttctgctttcagcgcaaccacttcccccaacattactcctctatttcagaaaacaacctc
cctgccgaactgtttccacagtataccaccgttgagtatgcatccactgctgaaatgggt
cctgtggcgcctcctgtcttcctctttgttgttgatacatgtatgattgaggaggagatt
ggatatttgaagtctgctttagcacaagctattgaactattgccagatcaatcccttgtt
ggatttattacttttgggacatatgtgcaggtgcatgagttgggttttggcttgttgcca
aagtcatatgtgttcaaagggaccaaagaagtgacaaaggagcaaattctggaccaaatg
agcttctttgccgggaaaactaaacccacaacaggtgtgatcgctggtgcaagggacggc
ctttcaacagagagcattgctaggttcctgctgcctgcttctgagtgcgagtttgtgttg
aattcagttatagaagaactgcaaaaggacccttggcctgttccagctgataaacgttca
tcaagatgtactggagttgcattaagtgttgctgctagtctcttgggggtttgcgttcct
ggatcaggtgctagaattatggcctttgtaggtggcccatctacggagggacctggttct
atcgtgtccaagtccctatcggaaccaattcgctcacacaaagaccttgataaaggttca
gctccactttataacaaagctgttaagttctatgaggatatctctaagcagcttgtgaat
caagggcatgtacttgatttatttgcttgtgcgcttgaccaggtaggtgttgctgagatg
aaggttgcagtggagagaactggtggaatagttgtgcttgcagaaagttttggtcattct
gtttttaaagactcacttcgacgaatctttcagtcaagtgacaatgatcttgatttatca
ttcaatggtatatttgagataaactgctcaaaggatgtcaaaatccaaggaattattgga
ccttgtacttctctggagaagaaaagtcctctatcctcagatacagtcataggtcaggga
aacactagtgcttggaagatgtgtggtctagacaggaaaacatcactgtgtttaatattt
gatattgcaaagaaggatgggccagaatcgattggtcaattagctagcaatcagttctac
ttccaattcttaacctattaccagcatcatgagggtcagatgagattacgagccactaca
ctttctagaaaatgggttgctggttctggtggtgtgcaggagctaatagctggatttgat
caagaggcggctgcggcagtcatggcacgcttggtctcatttaagatggaagctgaggct
gattttgacccgataagatggcttgaccgagcattaattagtttatgttcgaaatttgga
gactatcacaaagaaacaccctcatctttcagtttatcccctcgcctctcaattttcccc
cagtttattttcaatttgagacgatctcagtttgttcaggtttttaacaatagtccggat
gaaactgcatatttcacaatgatgctaaacagagagaatgtagcgaatgcagttgtgatg
atccagccatcacttatatcttattcattccaatcagctccagagcctgttctgttggat
gtaactgcaattgcagctgataggatccttttgttggactcttattttactgttgtcata
ttccatggaataacaattgcacagtggcgaaaggctggttaccaagatcaagaaggccat
gaggcatttgcccagttgttgcaagctccacaagaggaagctgatgcaataatcaaggaa
cgctttcctgtgcctcgtttggttgtgtgtgatcaacatggttctcaggctcgattctta
ctggcaaagcttaatccatctgtcaagtataactccaacaatcctccaccaccgggaggg
gatgtcatattcacggatgacgtgagcttccaggtcttcatggaccatctccaacgcttg
gcggttcagtaa
DBGET
integrated database retrieval system
