Panicum virgatum (switchgrass): 120678485
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Entry
120678485 CDS
T07260
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03020
RNA polymerase
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120678485
09124 Replication and repair
03420 Nucleotide excision repair
120678485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120678485
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120678485
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120678485
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120678485
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120678485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Ntox47
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
120678485
NCBI-ProteinID:
XP_039815622
LinkDB
All DBs
Position
6N:complement(6084631..6093889)
Genome browser
AA seq
1844 aa
AA seq
DB search
MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI
DRKIKCETCMAGMAECPGHFGLLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK
FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQHDTDDPVKKRGGCGAQQPNITV
DGMRMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIT
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQIN
LIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINDTISKAKNDVKELIKKAQEKQL
EAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKAEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRFQ
LGTEIATTGDHAWHLPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVVP
GDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVNKMKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIRIT
NDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKKGKVNKFEQNDGFKA
DQEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDH
LRGVTENIMLGQLAPIGTGGCSLYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGTP
YHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAFSPFPSPGGYSPSSGGYSPSSPVFT
PEKGYSPLSPSYSPASPSYSPTSPSYTPGSPTYSPTSPNYSPTSPTYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSY
NPSSAKYSPSHAYSPSSPRMTPYSQTSPSYSPTSPTYSPTSPSYSQPSPSYSPTSPFNTS
GGPSPDYSPTSPNYSPSGSYSPTAPGYSPSSTGQANDKDDESTR
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgaggttcccgtactcgccggccgaggtggccaaggtccagctcgtgcagttc
ggcatcctcagccccgacgagatcagacaaatgtcggtggttcaaatagaacatgcagag
acaatggagagggggaagcctaagcccggtgggctcagtgaccctcgattggggactatt
gaccggaaaatcaagtgcgagacatgcatggcaggcatggcggagtgtccaggccacttt
ggactccttgagcttgcaaagcccatgttccacatcggcttcattaaaactgtgctgtcc
attatgcgctgcgtctgctttaactgctccaagatcctcgcagatgaggatgataccaaa
tttaagcaggctctgaaaatcaggaatccaaagaatagattgaagagaatatatgatgct
tgcaagagcaaaaaagtctgtgcaggtggtgatgaccttgatgttcaggagcagcatgac
actgacgatcctgttaagaaaagaggtggttgtggtgctcagcagccaaatattacagtt
gatggtatgaggatggttgcagagttcaaagctccaaagaagaaaactgatgatcaggat
caactccctgagccagtggaacgaaagcaaatcctctccgctgagagggtccttaacgta
cttaagcgtataagtgacgaggactgccttctgttgggtctgaatcccaaatttgcccgt
cctgattggatgatacttcaagttcttccaattcctccaccccctgttagaccatctgtc
atgatggacacttcttccagaagtgaggatgatttgactcatcaattagctatgataata
cgacataatgagaatttgagaaggcaagaaagaaatggtgctccagctcacattataaca
gagtttgctcagctgttgcaatttcatattgcaacatactttgataatgaacttcctggt
caacccagggctacacagcgttctggaaggcctatcaaatcaatttgtagcaggcttaaa
gcaaaagaaggccggattagaggaaatttgatgggcaagcgtgttgatttctcggcccgt
actgttatcacaccagatccaaatataaacattgatgaactgggagtaccatggagtatt
gcattgaacctgacatatcctgaaacagttactccatataacattgagaggttgaaggaa
cttgtggaatatgggcctcaccctcccccagggaagacaggtgcaaagtacatcatcagg
gaagatggtcagaggcttgatcttcgctatgtgaagaaaagcagtgatcagcatttggag
ctgggttacaaggtggagaggcacctcaatgatggggattttgttcttttcaaccggcaa
ccaagccttcataaaatgtctatcatggggcatcgcatcaaaattatgccctactcaact
ttccggttgaacttgtctgtcacttcaccatataatgctgattttgatggggatgaaatg
aatatgcatgtccctcagtcatttgagaccagggcagaagttctagagttaatgatggtg
ccaaaatgcatcgtgtccccacaatcaaataggcctgtcatgggtattgtccaggacaca
ctgcttgggtgtcgtaaaattactaaaagggacacactcattgaaaaggatgtatttatg
aacatcttgatgtggtggcaagacttcgatgggaagattcctgcacctgctattttgaaa
cctaggcctatttggactgggaaacaagtttttaacttgattattcccaagcaaataaat
ttaattcggttttcagcctggcattcagaaacagaaacagggtttattactcctggtgac
acgatggtcaggatagagaagggagagcttctatctggtaccctttgcaaaaagagtctt
ggaacaggctctggaagtcttatccatgtcatttgggaagaggttggtccagatgctgcc
cgcaagttcttaggtcatacgcagtggcttgtcaactattggcttcttcagaatggtttc
agtattggaattggggatactattgctgatgcagccaccatggaaaagattaatgataca
atttctaaagctaaaaatgatgtgaaggagcttattaaaaaagcacaggagaagcagttg
gaagctgagccaggacgcaccatgatggaatcatttgaaaacaaagtgaaccaggttctc
aacaaggctcgtgatgatgctggaagcagtgctcagaagagcttatctgaaagcaacaat
ttgaaggctatggtcaccgcaggctcaaaaggcagtttcatcaacatatcacaaatgact
gcatgtgtcggacagcagaatgttgagggcaagcggatcccatttggtttcattgatcgg
actcttccacattttacaaaagatgactttggtcctgaaagccgtggatttgtggagaat
tcttaccttcgaggcctgacaccacaagaatttttctttcatgctatgggtggtagagaa
ggtcttatcgatactgctgtcaagacttctgagaccggatatatccagaggagacttgtg
aaggctatggaggacatcatggtgaaatatgatggtactgtaagaaattctctgggagac
gtaattcagttcttgtatggggaagatggcatggatgctgtttggattgaatctcaaaaa
ttggactcattgaagatgaagaaggctgagtttgataatgtattccgttatgagctggat
gacgagaactggaggcccaactacatgctgcctgaacatgttgatgatttgaagaccata
cgtgaattcagaaatgtgtttgaagcagaggttcaaaagctagaagctgatcggttccag
cttgggacagagattgccacaactggtgaccatgcatggcatttgcctgtgaacctcaag
cgacttatctggaatgcccagaagacattcaagattgattttagaagaccttctgatatg
cacccaatggaaattgtggaagcaatagataaacttcaagaaagactaaaggttgtacct
ggtgatgatgctatgagcattgaggctcagaagaatgcaaccttgttcttcaatatcctg
cttcgtagcacgtttgctagcaagagggtcttgaaggaatacaggcttacaaaggaagct
ttcgaatgggttattggtgagattgaatctaggttccttcagtctttggtggcccctggt
gaaatgattggatgtgttgctgcacagtccattggagaaccagcaactcagatgactctg
aataccttccattatgctggtgtcagtgccaagaatgtcacccttggggttcccaggttg
agagaaattattaatgttgccaagaagataaagactccatctttgtctgtttacctgaag
cctgaggtgaacaaaatgaaagagttggctaagaatgttcaatgtgctctagagtacacc
acactgcgcagtgtaacccatgccactgagatatggtatgaccctgatcctctaggaacc
atcattgaagaggatgtggagttcgtccggtcgtattatgaaatgcccgatgaagatatt
gacccggataagatctctccttggctgctgcgtattgagcttaaccgtgagatgatggtt
gataagaagttgagcatggctgatattgctgagaagatcaaccgtgaatttgatgatgac
ctgtcatgcatatttaatgatgataatgctgataagctcatcctccgtatccgtatcaca
aatgatgacgctccaaagggagaaatacaagatgagtctgctgaggatgatgtcttcctc
aagaagatagagggcaacatgttgacagaaatggctctaagaggcatcccagacattaac
aaagtgttcatcaaaaaagggaaggtcaataaatttgagcaaaatgatggtttcaaagca
gatcaggagtggatgcttgatacagaaggtgtgaatctcttagccgtgatgtgtcatgag
gatgttgatgctacaagaacaacaagtaatcatttgattgaagtaattgaggttcttgga
attgaggctgtccgtcgatctctcttggatgagcttcgggtggttatatctttcgatgga
tcctatgtgaactacaggcatctagccattctttgtgatacaatgacatacagaggtcat
ctaatggctattacaaggcacggtatcaatcgtaatgacactgggcctcttatgagatgt
tccttcgaagagactgtcgatatcttgcttgatgccgctgtatatgctgaatctgaccac
ctgagaggtgtcacggagaacattatgcttggtcagcttgcgcctattggtactggaggt
tgttcattatatctgaatgaccagatgttgcaacaggcaatagaacttcaactaccaagt
tatgttgaaggtctggactttgggatgacaccagcgcgttctcccatatccgggacaccc
tatcatgaaggaatgatgtcaccaagttatctgctgagtcccaacatcagggcttccccc
attaatacagatgcttcattctcaccatatgttgggcacatggcattctcaccatttcca
tcaccaggtggctactctccatcttcagggggatacagtccatcttctcctgttttcacc
ccagaaaaaggatatagccctctctctccatcatacagccctgcatcaccaagttatagt
cccacctccccatcctatacacctggctctcccacctatagtcctacaagcccaaattac
tccccaacaagtccaacttactcgcccaccagtccatcatactcacccacatctccaagc
tacagtcctacatctccaagctacagcccaacgtcaccaagctacagccccacttcacca
gtttatagtccaacctcaccagcatacagccccacatctcccgcatacagccccacatca
ccatcctatagcccaacctcaccatcctatagccctacatcaccttcatacagcccaaca
tcaccttcatacagcccgacatccccttcgtacagccctacctctccctcatacagccct
acctccccctcctacagcccaacttcacctgcatacagccctacctcgcccggctacagc
ccaacatcaccaagttacagcccgacatcaccaagctacagtcctacttcgccgagctac
aatccttcatcagccaagtacagcccttcacatgcttactctccaagcagcccaaggatg
actccatacagtcagacatctccaagctacagtccaacgtcaccgacttactcacctacg
tcaccatcgtattcacaaccaagtccctcgtacagcccaacgagcccgttcaatacctct
ggaggacctagtccagactacagcccaacctcaccaaattacagcccaagtggaagctac
tcacccactgcacccggatactccccatcatccacagggcaagcaaacgataaggatgat
gagagcactcgttga
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integrated database retrieval system
