Panicum virgatum (switchgrass): 120678534
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Entry
120678534 CDS
T07260
Name
(RefSeq) glycine--tRNA ligase, mitochondrial 1-like
KO
K01880
glycyl-tRNA synthetase [EC:
6.1.1.14
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120678534
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120678534
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120678534
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120678534
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.14 glycine---tRNA ligase
120678534
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
120678534
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
120678534
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
120678534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HGTP_anticodon
tRNA-synt_2b
WHEP-TRS
Motif
Other DBs
NCBI-GeneID:
120678534
NCBI-ProteinID:
XP_039815706
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Position
6N:50504868..50509346
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AA seq
740 aa
AA seq
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MVFMRFRPQLIFSSLPRSIPKPRTPPAATLAAAAAARRRHHTTVVATSMAATSEDALRRA
LAERQAAVDAQAEAVRALKAGGGASKADVDAAVEALKALKVEAGAAARRLQQAVGAGAGG
AAREELRQAVVNTLERKLFYIPSFKIYRGVAGLYDYGPPGCRVKANVLSFWRQHFVLEEN
MLEVDCPCVTPEIVLKASGHVEKFTDLMVKDEKTGTCYRADHLLKDFCKEKLEKDLTLPQ
EKADEFKRVLAILDDLSAEELGAKIKEYGIVAPDTKNPLSDPYPFNLMFQTSIGPTGLSV
GYMRPETAQGIFVNFKDLYYYNGQKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEH
FVDPEDKSHPKFVDVADLEFLMFPRELQLSGESAKLMKLGDAVSKGTVNNETLGYFIGRV
YLFLTRLGIDKGRLRFRQHLPNEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHS
EKSGVPLVAHEKFSKPREVEKLVIVPSKKDLGLAFKGNQKMVLEALESMSEKEALEMKAA
LETKGETSFKVCTLGKDVVITKKMVSISMEKKLEHQRVFTPSVIEPSFGIGRIIYCLFEH
SFYTRPSKSEEEQLNVFRFPPLVAPIKCTVFPLVKNQEFDAAAKVIAKALTTAGISHIID
TTAISIGRRYARTDEIGVPFAVTVDSTTNVTIRERDSKEQIRVDINEVASVVKQLTEGQS
TWADVSAKYPAHVGPQGDQE
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggtctttatgcgattccgcccccagctcatcttctcctcactcccccgctccatccct
aaacccagaaccccgcccgccgcaaccctagccgccgccgccgccgcgcgccgccgacac
cacaccaccgtcgtcgccacctccatggccgcgacgtcggaggacgcgctgcggcgcgcg
ctcgccgagcgccaggccgccgtggacgcgcaggccgaggccgtgcgcgcgctcaaggcc
ggcggcggcgcgtccaaggccgatgtggacgcggcggtcgaggcgctgaaggcgctcaag
gtcgaggccggcgccgccgcgcgccggctgcagcaggccgtcggggcgggcgcgggcggc
gccgcgagggaggagctgcggcaggccgtggtgaacaccctggagcggaagctgttctac
ataccctcgtttaagatctaccgcggggtggcggggctctacgactacgggccgcctggg
tgccgcgtcaaggcaaatgttctttccttctggcgccagcactttgttctggaagagaac
atgttggaggttgactgcccctgtgtcacacctgagatcgttctgaaggcatcaggccat
gttgagaagtttactgacctcatggttaaagatgagaagacaggcacatgctaccgtgct
gatcacttgttgaaagatttttgcaaggagaagcttgagaaagaccttaccttgccccaa
gaaaaggctgatgaatttaagcgtgttcttgccatcttggatgacctctcagcagaggag
cttggtgcaaagattaaggaatatggcatcgttgcccctgatacaaagaacccgctttct
gatccctatccatttaatcttatgttccagacatctattgggcccactggtctaagcgtg
gggtatatgcgacctgagactgcgcagggcatttttgtaaacttcaaggacctttactac
tacaatggccaaaagcttccctttgcagcagctcaaattgggcaggcttttagaaatgag
atctcaccacgacaaggtcttctccgagtgcgtgaattcacattggcagagattgagcat
tttgtggacccagaggataaatcacacccaaagttcgttgatgttgctgatttggagttc
ttgatgttcccaagagagctgcaactctcaggggagtcagccaagttaatgaagcttggg
gatgcagtttcaaagggaactgttaataacgagacacttggttacttcattggaagggtc
tatcttttcctgacacgcttgggaattgataagggtcggctgcgcttcaggcagcatcta
cctaatgagatggcccactatgccgctgactgttgggatgctgaaatagagtgctcttat
gggtggatagagtgcgtgggtattgctgatagatctgcatatgatttgcgagcacactct
gagaaaagtggtgtcccacttgtcgctcatgaaaagttttccaagcctagagaggttgag
aaacttgtaatagttccctcaaagaaagacctgggacttgcttttaagggcaaccaaaag
atggtccttgaagcattggagtctatgagtgagaaggaagctttagagatgaaagctgca
ctagaaaccaaaggggagacaagctttaaagtctgcacacttggaaaagatgtggtgatt
accaagaaaatggtgtcaatcagcatggagaagaaactggagcatcagcgagtcttcacc
ccatcggtcattgaaccatcatttggcatagggaggatcatctactgtttgttcgagcat
tcgttttacacaaggcctagcaaatcagaagaggaacagcttaatgtcttccggttccct
cctctagtggctcctatcaagtgcactgtgttccccctggtgaagaaccaagagtttgat
gctgctgccaaagtgattgctaaagcattaacaactgctggtatatcgcacattattgac
actactgctatatccattgggaggcggtatgcgaggacagatgagattggtgttccattt
gctgtaacagttgattccacaacaaacgtgactatccgggagagggacagtaaagaacag
atccgggtggacatcaacgaggtcgcatccgtggtgaagcaactgacagaaggccaaagc
acctgggctgatgtttctgcaaagtatcccgcccatgttggcccccaaggtgaccaggag
tga
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